Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MP622_RS15410 Genome accession   NZ_CP094643
Coordinates   3266403..3268517 (+) Length   704 a.a.
NCBI ID   WP_171284997.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3261403..3273517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS15390 (MP622_15390) pilM 3263340..3264398 (+) 1059 WP_243791682.1 pilus assembly protein PilM Machinery gene
  MP622_RS15395 (MP622_15395) pilN 3264398..3265075 (+) 678 WP_044739695.1 PilN domain-containing protein Machinery gene
  MP622_RS15400 (MP622_15400) comO 3265072..3265818 (+) 747 WP_243791683.1 type 4a pilus biogenesis protein PilO Machinery gene
  MP622_RS15405 (MP622_15405) pilP 3265815..3266342 (+) 528 WP_016168706.1 pilus assembly protein PilP Machinery gene
  MP622_RS15410 (MP622_15410) pilQ 3266403..3268517 (+) 2115 WP_171284997.1 type IV pilus secretin PilQ family protein Machinery gene
  MP622_RS15415 (MP622_15415) aroK 3268555..3269097 (+) 543 WP_016168704.1 shikimate kinase AroK -
  MP622_RS15420 (MP622_15420) aroB 3269118..3270200 (+) 1083 WP_243791685.1 3-dehydroquinate synthase -
  MP622_RS15425 (MP622_15425) - 3270211..3271083 (+) 873 WP_243791687.1 hypothetical protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 76453.56 Da        Isoelectric Point: 5.2332

>NTDB_id=670337 MP622_RS15410 WP_171284997.1 3266403..3268517(+) (pilQ) [Acinetobacter sp. PK01]
MNHIFRQFSMGAVAMAVMQAASAQVSITNVVPMQVPGQGTEIRVMFNGIPPQPQAYQLEQPSRLILDFDKAQQTLKQNNI
QVATKEASSVDVSSDAQRSRLTINLADAGAFTTRVEGNTFILKINATDNSFATPVATTAKAPSQGVSNIGFQRGSEGEGQ
VVIDLLGSNTPADVQQQGSKIVVRMLGSKIPAHLTRRLNVNDFATPVATVDAYNDGNSGVITIQSSGSYEYMAYQAENKL
TISLKRPVDKNPMKPRTANNYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTK
NLDKRRNGNVIWIAPVAELIKSEEDEAKAIAQSVKLAPIQTEYLRLSYAKAADVFKLVTDSRKEAGKNTGVNNQDSLALE
SLLSSRGSIVSDDRTNTLIVNDTAQNIDKIRKMVDLLDVQVQQVMVEARIVRASTSFTKEMGVKWGILSQGINSNNDLLV
GGSDQTLWDLKTPDDDGKYTIQRPDNLNVDLGVTNPAGQIAFSLISLSDFMLDLELSALQADGYGEVISTPKVLTGDKQK
AKVATGQEVPYQTTTNSASGSTATTSFKEALLSLEVTPSITPDGKVQMQLDIAKDSIAGEAPNGELILNKNTITTNVLVN
NGETVILGGVFEQTTSNSQTKVPFLGDIPYIGRLFRKDTKSDDKQELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=670337 MP622_RS15410 WP_171284997.1 3266403..3268517(+) (pilQ) [Acinetobacter sp. PK01]
ATGAATCATATTTTCCGTCAATTCTCTATGGGTGCGGTTGCCATGGCTGTCATGCAAGCTGCCAGTGCACAAGTTAGCAT
CACGAATGTCGTACCTATGCAAGTACCTGGACAAGGGACTGAAATTCGTGTGATGTTTAACGGAATACCACCACAGCCTC
AAGCTTACCAACTTGAACAACCATCAAGACTGATTTTAGATTTTGATAAAGCGCAACAAACACTAAAGCAAAATAATATT
CAGGTTGCGACAAAAGAAGCCAGTTCTGTCGATGTATCTTCAGACGCGCAGCGTTCTCGATTAACTATTAATCTTGCAGA
TGCAGGTGCTTTCACTACCCGTGTTGAAGGTAATACCTTTATTCTTAAAATAAATGCGACTGATAATAGTTTTGCGACTC
CTGTAGCAACAACGGCTAAAGCGCCATCACAAGGTGTTTCCAATATTGGTTTTCAACGTGGTTCAGAAGGTGAAGGTCAG
GTTGTTATTGATTTGCTCGGCAGCAATACGCCAGCAGATGTGCAGCAACAAGGGAGTAAAATTGTGGTGCGTATGTTGGG
AAGTAAAATTCCGGCACATTTGACTCGCCGCCTCAATGTCAATGATTTTGCAACACCTGTAGCAACAGTAGATGCTTATA
ATGATGGTAATAGTGGTGTAATTACTATTCAGTCCTCTGGTAGCTATGAGTACATGGCTTACCAAGCTGAGAATAAGTTA
ACGATCAGCTTAAAGCGTCCTGTCGATAAGAATCCAATGAAACCGCGTACAGCTAATAACTACACGGGTAAGAAGATTTC
ATTGGATTTCCAAGATATTGAGGTACGTCGTGTATTGCAATTATTGGCAGATTTTACTGGTATTAATATGGTGGCTGCCG
ATACGGTACAAGGCAATATCACCTTGCGTCTGAAAGATGTGCCATGGGACCAAGCTCTTGATATTATTTTAAAAACAAAA
AACTTAGACAAGCGTCGTAATGGGAATGTGATTTGGATTGCACCAGTTGCTGAATTGATCAAGTCTGAAGAAGATGAAGC
CAAAGCGATAGCGCAGAGTGTTAAGTTAGCACCAATTCAAACTGAATATTTACGTTTAAGTTATGCTAAAGCAGCGGATG
TTTTTAAACTTGTAACAGATTCTAGAAAGGAAGCTGGTAAAAATACAGGTGTAAATAATCAAGACTCTTTAGCTTTAGAA
AGTTTATTAAGTTCAAGAGGAAGTATTGTTTCAGATGATCGTACGAATACGTTAATCGTAAATGATACAGCGCAAAACAT
AGACAAAATTAGAAAAATGGTTGATTTGCTGGATGTACAAGTACAGCAGGTTATGGTTGAAGCACGCATCGTACGAGCAT
CTACTTCATTTACTAAAGAGATGGGAGTGAAGTGGGGGATTCTTTCACAAGGGATTAATAGCAATAACGATCTCTTAGTG
GGTGGTAGTGATCAAACTTTATGGGATTTAAAAACCCCAGATGATGATGGAAAATACACTATTCAGCGTCCAGATAATTT
AAACGTTGATTTGGGGGTGACCAATCCTGCGGGTCAGATTGCCTTTAGCTTGATTAGCCTGTCCGATTTTATGTTGGATC
TTGAACTCTCAGCTTTACAAGCAGATGGCTATGGCGAGGTGATCTCAACACCAAAAGTTTTGACTGGAGATAAACAAAAG
GCCAAGGTAGCGACAGGTCAAGAAGTACCTTATCAAACCACAACGAACTCTGCTTCTGGCTCAACAGCAACTACCTCATT
CAAAGAAGCGCTGCTCAGTTTGGAAGTTACGCCAAGTATTACCCCAGACGGTAAAGTGCAAATGCAGCTTGATATTGCGA
AAGACTCGATTGCAGGCGAAGCGCCAAATGGTGAGTTGATATTAAACAAAAACACAATTACGACCAATGTTTTGGTCAAT
AATGGCGAAACAGTGATTTTGGGTGGTGTATTTGAGCAGACAACCAGTAACTCGCAAACTAAGGTGCCGTTCTTGGGGGA
TATTCCTTATATCGGAAGATTGTTTAGAAAAGATACCAAGTCGGATGACAAGCAAGAGCTGTTGATTTTTGTGACACCAC
GAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(41-120)

Bacterial type II and III secretion system protein (Secretin)

(538-696)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)

Secretin and TonB N terminus short domain (STN)

(293-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

77.824

100

0.803
  pilQ Acinetobacter baumannii strain A118

77.686

100

0.801
  comQ Acinetobacter baylyi ADP1

74.93

100

0.756
  pilQ Pseudomonas aeruginosa PAK

41.867

100

0.42
  pilQ Legionella pneumophila strain Lp02

36.582

100

0.368
  pilQ Legionella pneumophila strain ERS1305867

36.61

99.716

0.365