Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   MP622_RS15400 Genome accession   NZ_CP094643
Coordinates   3265072..3265818 (+) Length   248 a.a.
NCBI ID   WP_243791683.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3260072..3270818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS15385 (MP622_15385) ponA 3260649..3263174 (-) 2526 WP_243791680.1 penicillin-binding protein PBP1a -
  MP622_RS15390 (MP622_15390) pilM 3263340..3264398 (+) 1059 WP_243791682.1 pilus assembly protein PilM Machinery gene
  MP622_RS15395 (MP622_15395) pilN 3264398..3265075 (+) 678 WP_044739695.1 PilN domain-containing protein Machinery gene
  MP622_RS15400 (MP622_15400) comO 3265072..3265818 (+) 747 WP_243791683.1 type 4a pilus biogenesis protein PilO Machinery gene
  MP622_RS15405 (MP622_15405) pilP 3265815..3266342 (+) 528 WP_016168706.1 pilus assembly protein PilP Machinery gene
  MP622_RS15410 (MP622_15410) pilQ 3266403..3268517 (+) 2115 WP_171284997.1 type IV pilus secretin PilQ family protein Machinery gene
  MP622_RS15415 (MP622_15415) aroK 3268555..3269097 (+) 543 WP_016168704.1 shikimate kinase AroK -
  MP622_RS15420 (MP622_15420) aroB 3269118..3270200 (+) 1083 WP_243791685.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 27915.55 Da        Isoelectric Point: 4.9924

>NTDB_id=670335 MP622_RS15400 WP_243791683.1 3265072..3265818(+) (comO) [Acinetobacter sp. PK01]
MSRDEFDDLNQEAVVKTKKKMTVDKFFQQFNTLDPNNYGSWPLSVKITCWIFIVFLICAVGYFVVIKPQLDAISSAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLEPEVKQEFFVEQP
ISIEATGDYHAFGSFASGIAALPRIVTLHDFDISSSISTDKKSEIPQVTYVAKARTYRYIGNTENQNVAAGANATTPPAQ
VTPEGAKK

Nucleotide


Download         Length: 747 bp        

>NTDB_id=670335 MP622_RS15400 WP_243791683.1 3265072..3265818(+) (comO) [Acinetobacter sp. PK01]
ATGAGTCGTGATGAGTTTGATGATCTAAATCAAGAAGCCGTTGTTAAAACTAAGAAAAAAATGACAGTAGATAAGTTTTT
TCAACAATTTAACACGTTGGACCCGAATAATTACGGCAGTTGGCCATTATCAGTCAAAATTACCTGCTGGATTTTTATTG
TCTTTTTAATTTGTGCGGTTGGCTATTTTGTTGTGATCAAGCCGCAATTAGATGCGATTTCTAGCGCACATGCGCAAGAG
CAAAACTTGCTAAATGAATTCAGAGAAAAGGATTCTAAGTTACGTAATTTGCAACAATATCAAGCTCAGTTGCAGGAAAT
GGAGGCGAACTTTAATCAGCAATTGGAGCAATTGCCAAAGGAAACTGAAATTCCAGGTCTGGTTGAAGACATTAACGTGA
CAGGTGTGAATTCTGGGCTTAAATTTAAAAATATTCGTTTAGAGCCTGAAGTCAAACAAGAGTTTTTTGTTGAGCAGCCA
ATTAGTATTGAAGCGACAGGCGATTATCATGCCTTTGGTTCTTTTGCGAGTGGCATTGCAGCATTACCTCGAATTGTGAC
CTTACATGATTTTGATATCAGTTCTTCAATTAGTACGGATAAAAAATCTGAAATTCCACAAGTGACTTATGTTGCGAAGG
CACGTACCTATCGCTATATCGGTAATACAGAGAATCAAAATGTGGCAGCTGGTGCGAATGCTACAACTCCTCCTGCTCAA
GTTACTCCAGAAGGAGCGAAGAAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

71.901

97.581

0.702
  pilO Acinetobacter baumannii D1279779

70.711

96.371

0.681