Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MP622_RS15395 Genome accession   NZ_CP094643
Coordinates   3264398..3265075 (+) Length   225 a.a.
NCBI ID   WP_044739695.1    Uniprot ID   A0A5N4WPU5
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3259398..3270075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS15380 (MP622_15380) - 3259795..3260598 (+) 804 WP_243791678.1 putative RNA methyltransferase -
  MP622_RS15385 (MP622_15385) ponA 3260649..3263174 (-) 2526 WP_243791680.1 penicillin-binding protein PBP1a -
  MP622_RS15390 (MP622_15390) pilM 3263340..3264398 (+) 1059 WP_243791682.1 pilus assembly protein PilM Machinery gene
  MP622_RS15395 (MP622_15395) pilN 3264398..3265075 (+) 678 WP_044739695.1 PilN domain-containing protein Machinery gene
  MP622_RS15400 (MP622_15400) comO 3265072..3265818 (+) 747 WP_243791683.1 type 4a pilus biogenesis protein PilO Machinery gene
  MP622_RS15405 (MP622_15405) pilP 3265815..3266342 (+) 528 WP_016168706.1 pilus assembly protein PilP Machinery gene
  MP622_RS15410 (MP622_15410) pilQ 3266403..3268517 (+) 2115 WP_171284997.1 type IV pilus secretin PilQ family protein Machinery gene
  MP622_RS15415 (MP622_15415) aroK 3268555..3269097 (+) 543 WP_016168704.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24772.22 Da        Isoelectric Point: 4.7131

>NTDB_id=670334 MP622_RS15395 WP_044739695.1 3264398..3265075(+) (pilN) [Acinetobacter sp. PK01]
MAKINLLPWRDELREKRKKEFIAICIGAALIGVLLVVGAWFYYNYKLEDQEQANQLIISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPIAVRLIDEMARVVPANLYITKFSRIGDKFTIEGKAESPNAVAEFLRNLEASAWYRNAFMDSFVA
VEDNKNKAPSSIVPRVEDSYGSFVVTADLDEIAMPTDAANEAAGSMAVAANDANAAASSTAGAAQ

Nucleotide


Download         Length: 678 bp        

>NTDB_id=670334 MP622_RS15395 WP_044739695.1 3264398..3265075(+) (pilN) [Acinetobacter sp. PK01]
ATGGCAAAAATTAACCTGCTCCCTTGGCGTGATGAGCTGAGAGAGAAACGAAAAAAAGAATTTATTGCGATTTGTATTGG
GGCGGCTTTAATTGGGGTGTTATTGGTTGTAGGGGCCTGGTTCTATTACAACTATAAGCTTGAAGACCAAGAACAAGCGA
ATCAGCTTATTATCAGTACCAATCAAAACTTGGATGTACAACTAAAATCTTTAGAAGGTTTACAAGAGCAACGTAATGCA
ATTGTAGAACGTATGAAGTTGATCCAGGGTCTGCAAAGTCAACGTCCAATTGCCGTGCGTTTAATTGATGAAATGGCGCG
TGTCGTCCCTGCGAACTTATATATTACTAAGTTCAGTCGTATTGGCGATAAATTTACTATTGAAGGTAAGGCAGAAAGTC
CAAATGCAGTAGCTGAATTTTTACGTAATTTAGAAGCTTCAGCTTGGTATCGTAATGCCTTTATGGATTCCTTCGTGGCT
GTGGAAGATAATAAAAATAAAGCGCCGAGTTCAATTGTTCCTCGTGTTGAGGATAGTTATGGCAGCTTTGTGGTAACTGC
AGATTTGGATGAGATTGCTATGCCGACGGATGCAGCGAATGAAGCTGCAGGTTCTATGGCGGTAGCGGCAAATGATGCAA
ATGCAGCAGCTAGTTCAACAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5N4WPU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

68.396

94.222

0.644
  comN Acinetobacter baylyi ADP1

72.539

85.778

0.622