Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG788_RS32630 Genome accession   NZ_CP109040
Coordinates   7413415..7414191 (-) Length   258 a.a.
NCBI ID   WP_266763403.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00647     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7408415..7419191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG788_RS32620 (OG788_32630) - 7408909..7410924 (+) 2016 WP_406376906.1 IucA/IucC family protein -
  OG788_RS32625 (OG788_32635) - 7411013..7413031 (+) 2019 WP_351556835.1 ATP-dependent DNA helicase -
  OG788_RS32630 (OG788_32640) dinR/lexA 7413415..7414191 (-) 777 WP_266763403.1 transcriptional repressor LexA Regulator
  OG788_RS32635 (OG788_32645) nrdR 7414708..7415259 (+) 552 WP_356755629.1 transcriptional regulator NrdR -
  OG788_RS32640 (OG788_32650) - 7415422..7418319 (+) 2898 WP_406374765.1 vitamin B12-dependent ribonucleotide reductase -
  OG788_RS32645 (OG788_32655) - 7418469..7419155 (+) 687 WP_406374766.1 DUF6215 domain-containing protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27963.68 Da        Isoelectric Point: 7.4756

>NTDB_id=670102 OG788_RS32630 WP_266763403.1 7413415..7414191(-) (dinR/lexA) [Streptomyces sp. NBC_00647]
MTTTADSATITAQERSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=670102 OG788_RS32630 WP_266763403.1 7413415..7414191(-) (dinR/lexA) [Streptomyces sp. NBC_00647]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGAGCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCATGAGGGGCCCAAGCGCTCCCTGCCTGGCCGACCTCCAGGCATCCGGGCCGACAGCTCGGGACTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGTCAGGCCGTCGGCCTTTCCAGCACCTCCTCGGTCGCGCATCAGCTCATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
AGACCCGCACCGCCCGCGTGCGTACGAGGTGCGGGGTTCCGACCAGTCGTCGGTGCAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCCTATGTGCCGCTCGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAATCGGTCGAGGACGTT
TTCCCTCTCCCCCGCCAGCTGGTCGGCGACGGAGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGCGGC
CATCTGTGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTCGACG
GCGAAGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGACACGTGTGGCTGCTGCCGCACAACTCCGCGTACCAGCCGATC
CCCGGTGACGAGGCGACCATCCTCGGCAAGGTAGTGGCTGTACTGCGTCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372