Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MST16_RS15190 Genome accession   NZ_CP094541
Coordinates   3077463..3078149 (-) Length   228 a.a.
NCBI ID   WP_078189382.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3072463..3083149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15170 (MST16_15140) aroK 3073519..3074064 (-) 546 WP_078189378.1 shikimate kinase AroK -
  MST16_RS15175 (MST16_15145) pilQ 3074101..3076203 (-) 2103 WP_180088921.1 type IV pilus secretin PilQ Machinery gene
  MST16_RS15180 (MST16_15150) pilP 3076220..3076747 (-) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  MST16_RS15185 (MST16_15155) pilO 3076744..3077466 (-) 723 WP_168378181.1 type 4a pilus biogenesis protein PilO Machinery gene
  MST16_RS15190 (MST16_15160) pilN 3077463..3078149 (-) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  MST16_RS15195 (MST16_15165) comM 3078149..3079207 (-) 1059 WP_078189383.1 pilus assembly protein PilM Machinery gene
  MST16_RS15200 (MST16_15170) ponA 3079373..3081913 (+) 2541 WP_180092204.1 penicillin-binding protein PBP1a -
  MST16_RS15205 (MST16_15175) - 3081967..3082770 (-) 804 WP_180092277.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25390.94 Da        Isoelectric Point: 5.7844

>NTDB_id=670101 MST16_RS15190 WP_078189382.1 3077463..3078149(-) (pilN) [Acinetobacter sp. YH16040_T]
MAKINLLPWRDELREKRKKEFIALCIGAFLIGVIGVGLTWLYFDHKLKDQEQANQLIISHNQNLDVQLKSLDGLQEQRNA
IIERMKLIQGLQGQRPIAVHLVDELVRVTPANMYITKFERNGDKFMIEGRAESPNTVADLLRNLEASPWYRNAFMSSFLV
AEEKKDKAPTSVVPRVEESYGAFTVTADLEQIAQPTINDPAANAGQSASSAQTSDAQTAATPTPEAAK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=670101 MST16_RS15190 WP_078189382.1 3077463..3078149(-) (pilN) [Acinetobacter sp. YH16040_T]
ATGGCAAAAATTAACTTGCTCCCTTGGCGTGATGAGCTAAGAGAGAAACGAAAAAAAGAATTTATTGCACTTTGTATTGG
GGCTTTTTTAATTGGGGTAATTGGGGTTGGTTTAACATGGTTGTACTTTGATCACAAATTAAAAGATCAAGAACAAGCGA
ACCAATTGATTATCAGTCATAACCAAAATTTAGATGTTCAATTAAAGTCTTTAGATGGTTTGCAAGAACAACGTAATGCC
ATTATTGAACGCATGAAGCTGATTCAAGGCTTACAAGGTCAACGTCCAATCGCGGTACATCTTGTAGATGAATTGGTTCG
TGTGACACCTGCCAATATGTACATCACAAAATTTGAGCGTAATGGCGACAAATTTATGATCGAAGGGCGTGCGGAAAGTC
CAAATACTGTTGCAGATTTACTGCGTAATTTGGAAGCATCACCTTGGTATCGTAATGCCTTCATGAGCTCATTCCTTGTG
GCTGAAGAGAAAAAAGACAAAGCGCCGACGTCAGTGGTTCCTCGCGTAGAAGAATCTTATGGTGCATTTACTGTGACTGC
TGATTTGGAGCAAATTGCGCAGCCGACCATTAATGATCCAGCAGCAAATGCAGGACAGTCAGCTTCATCGGCGCAAACAT
CTGACGCACAAACTGCAGCAACACCAACTCCGGAGGCTGCAAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.014

93.421

0.645
  comN Acinetobacter baylyi ADP1

71.503

84.649

0.605