Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MST16_RS15175 Genome accession   NZ_CP094541
Coordinates   3074101..3076203 (-) Length   700 a.a.
NCBI ID   WP_180088921.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3069101..3081203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15160 (MST16_15130) - 3071575..3072414 (-) 840 WP_180092210.1 hypothetical protein -
  MST16_RS15165 (MST16_15135) aroB 3072422..3073504 (-) 1083 WP_180092207.1 3-dehydroquinate synthase -
  MST16_RS15170 (MST16_15140) aroK 3073519..3074064 (-) 546 WP_078189378.1 shikimate kinase AroK -
  MST16_RS15175 (MST16_15145) pilQ 3074101..3076203 (-) 2103 WP_180088921.1 type IV pilus secretin PilQ Machinery gene
  MST16_RS15180 (MST16_15150) pilP 3076220..3076747 (-) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  MST16_RS15185 (MST16_15155) pilO 3076744..3077466 (-) 723 WP_168378181.1 type 4a pilus biogenesis protein PilO Machinery gene
  MST16_RS15190 (MST16_15160) pilN 3077463..3078149 (-) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  MST16_RS15195 (MST16_15165) comM 3078149..3079207 (-) 1059 WP_078189383.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 75964.92 Da        Isoelectric Point: 5.9971

>NTDB_id=670098 MST16_RS15175 WP_180088921.1 3074101..3076203(-) (pilQ) [Acinetobacter sp. YH16040_T]
MKNSVQDFIFGDGNTMNHVFRQFSMGAVAMAMMQVANAQVSVTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLDQPSRLV
LDFDKAQQNLKQSSIPVATAEASTVDVSSDAQRARLTVNLANAGAFTTRVEGNTFILKINSAQAANYVQPVAQRQQQGIS
NIGFHRGSNGEGQVVVDLLGGNTPVDVQQQGSKVVIRTLGNKVPAHLTRRLNVNDFATPVATVDAHNDGGNGVITIQSTG
SYEYMAYQTDNKLTVSLKRPEDKNPLRPKAANHYTGKKISLDFQDIEVRRVLQLLADFTEINMVAADTVQGNITLRLKDV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKAEDDEAKALAQRIKLAPIQTEYIQLSYAKSSDILKLLEDSRDGKGA
ESNGTAGGTSLALESMLSPRGSVVSDNRTNTLIVNDTSENIDKVRKMIDLLDVAVKQVMVETRIVTAQTEFSRELGVNWG
IQRNNPSLSGGANGSNVWGGDYSPKLDLAVDLGTASAGNFSFGLLKISDFMLDLQLTALQSDGHGEVLAAPKVLTGDKQK
ATILRGDQIPYQSWSAEGGTTTSFVDANLKLEVTPSITPDGRVQMDLKVNKDTVGRLTAAGYLINTNKLETNVLVGDGET
VVLGGIFDDIQQNQYTKVPFLGDLPVFGNLFKNNVKTSAQTELLIFVTPRIVNDSVTRNH

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=670098 MST16_RS15175 WP_180088921.1 3074101..3076203(-) (pilQ) [Acinetobacter sp. YH16040_T]
ATGAAGAATAGTGTACAAGATTTTATTTTTGGGGATGGCAATACAATGAATCATGTGTTTCGTCAGTTTTCGATGGGGGC
TGTTGCAATGGCGATGATGCAAGTTGCCAATGCTCAGGTGAGTGTAACCAATGTGGTACCAATGCAAATTCCAGGTCAAG
GGACTGAAATTCGCGTGATGTTTAATGGCTTGCCGCCGCAACCACAAGCTTATCAACTCGATCAACCATCACGATTGGTT
TTAGACTTTGATAAAGCACAACAAAATTTAAAACAAAGTTCAATTCCTGTTGCAACGGCTGAAGCGAGCACTGTGGATGT
GAGTTCGGATGCACAACGTGCGCGCTTAACGGTAAATTTAGCCAATGCTGGCGCTTTTACCACGCGTGTTGAAGGTAATA
CCTTTATTTTAAAAATCAACTCTGCACAAGCTGCAAATTATGTACAGCCTGTAGCACAACGTCAGCAACAGGGCATCTCA
AATATTGGTTTCCACCGTGGTTCTAATGGTGAAGGTCAAGTTGTTGTTGATTTACTCGGTGGAAATACTCCCGTTGATGT
TCAACAGCAAGGCAGTAAAGTGGTGATCCGTACTTTAGGCAATAAAGTACCTGCACATTTGACTCGCCGTTTAAATGTCA
ATGATTTTGCAACACCTGTTGCAACGGTGGACGCACATAATGATGGCGGTAATGGTGTGATTACCATTCAGTCGACGGGC
AGCTATGAATATATGGCGTACCAAACTGATAATAAATTAACGGTAAGTTTGAAACGTCCGGAAGATAAGAATCCATTACG
TCCTAAAGCTGCCAATCATTATACCGGTAAGAAAATTTCATTAGACTTCCAAGATATTGAAGTACGTCGTGTGCTGCAAC
TTTTGGCTGATTTCACTGAAATCAATATGGTTGCTGCTGATACGGTTCAAGGAAATATTACACTTCGCTTAAAAGATGTT
CCTTGGGATCAAGCGCTAGACATTGTTTTGAAAACCAAGAATTTGGATAAACGTCGTAATGGTAATGTGATTTGGATTGC
GCCTGTATCTGAGTTGATTAAAGCGGAAGATGATGAAGCAAAAGCACTTGCACAGCGAATAAAATTAGCGCCGATTCAAA
CTGAATATATTCAGCTGAGCTATGCGAAATCTTCAGATATTTTAAAATTATTAGAAGATTCCCGAGATGGAAAAGGAGCC
GAGTCGAATGGCACAGCAGGAGGTACATCACTTGCATTAGAAAGTATGCTGAGCCCAAGAGGTAGTGTAGTTTCTGATAA
CCGGACCAATACACTTATTGTTAATGATACATCTGAGAATATTGATAAAGTTCGTAAGATGATTGATCTATTAGATGTTG
CTGTCAAACAAGTCATGGTTGAAACAAGAATTGTGACCGCTCAAACAGAATTTTCGAGAGAACTCGGTGTTAACTGGGGT
ATACAGCGTAATAATCCGAGTTTAAGTGGTGGTGCTAATGGATCAAATGTTTGGGGTGGAGATTATTCTCCAAAGTTAGA
TTTAGCGGTAGATTTAGGGACGGCATCAGCAGGAAATTTTAGTTTTGGGTTGCTTAAAATTTCAGACTTTATGCTTGATC
TACAACTTACAGCTTTACAATCGGATGGTCACGGTGAAGTTTTAGCAGCACCAAAAGTTTTAACGGGTGATAAGCAAAAA
GCAACAATCTTAAGAGGCGATCAAATTCCGTATCAAAGTTGGAGTGCTGAAGGTGGTACGACAACAAGTTTTGTTGATGC
AAACTTGAAACTGGAAGTGACCCCAAGTATTACGCCAGATGGGAGGGTACAGATGGATTTAAAAGTTAACAAGGATACTG
TTGGTCGATTAACCGCGGCCGGTTATTTAATTAATACCAATAAACTTGAGACTAATGTTTTAGTCGGTGATGGTGAAACA
GTGGTCCTAGGTGGTATTTTTGATGACATTCAACAAAATCAATATACCAAAGTACCTTTTTTGGGGGATTTGCCGGTTTT
CGGAAACTTATTTAAAAATAATGTGAAAACTAGCGCACAGACAGAGCTCCTGATTTTTGTTACTCCGCGAATTGTTAATG
ACAGTGTTACGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-137)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-457)

Bacterial type II and III secretion system protein (Secretin)

(538-692)

Secretin and TonB N terminus short domain (STN)

(306-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.742

100

0.677
  pilQ Acinetobacter baumannii strain A118

65.603

100

0.676
  comQ Acinetobacter baylyi ADP1

63.188

100

0.64
  pilQ Pseudomonas aeruginosa PAK

40.843

98.286

0.401