Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   MST16_RS15180 Genome accession   NZ_CP094541
Coordinates   3076220..3076747 (-) Length   175 a.a.
NCBI ID   WP_078192530.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3071220..3081747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15160 (MST16_15130) - 3071575..3072414 (-) 840 WP_180092210.1 hypothetical protein -
  MST16_RS15165 (MST16_15135) aroB 3072422..3073504 (-) 1083 WP_180092207.1 3-dehydroquinate synthase -
  MST16_RS15170 (MST16_15140) aroK 3073519..3074064 (-) 546 WP_078189378.1 shikimate kinase AroK -
  MST16_RS15175 (MST16_15145) pilQ 3074101..3076203 (-) 2103 WP_180088921.1 type IV pilus secretin PilQ Machinery gene
  MST16_RS15180 (MST16_15150) pilP 3076220..3076747 (-) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  MST16_RS15185 (MST16_15155) pilO 3076744..3077466 (-) 723 WP_168378181.1 type 4a pilus biogenesis protein PilO Machinery gene
  MST16_RS15190 (MST16_15160) pilN 3077463..3078149 (-) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  MST16_RS15195 (MST16_15165) comM 3078149..3079207 (-) 1059 WP_078189383.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19253.35 Da        Isoelectric Point: 7.1660

>NTDB_id=670099 MST16_RS15180 WP_078192530.1 3076220..3076747(-) (pilP) [Acinetobacter sp. YH16040_T]
MKMNKLALSVMVGFVLAGCESRIDVVNQEMANIRNQAPLAIEPAPDFVPVETFNYAAHSLKSPFLPSSLAAELKIMAGKR
VYPNLSRQPQPLESYALETLNMKGSMRNQSGQILALIQTPDGEVERIQRGSYMGLNHGRVVNITPTQIDLIEIIPDGREG
YVERPRSLILIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=670099 MST16_RS15180 WP_078192530.1 3076220..3076747(-) (pilP) [Acinetobacter sp. YH16040_T]
ATGAAAATGAATAAATTGGCACTTTCTGTGATGGTTGGATTTGTATTAGCAGGTTGTGAATCACGTATTGATGTGGTCAA
TCAAGAGATGGCAAATATACGCAATCAAGCGCCACTAGCGATTGAGCCTGCGCCAGATTTTGTGCCTGTCGAGACTTTTA
ATTATGCAGCGCATTCATTAAAAAGTCCGTTCTTGCCAAGTTCATTGGCAGCAGAACTTAAAATCATGGCGGGTAAGCGT
GTTTATCCAAACTTGAGTCGTCAGCCTCAACCTTTGGAAAGTTATGCACTCGAAACCCTGAATATGAAGGGTAGTATGCG
TAACCAATCTGGGCAAATTTTAGCCTTGATTCAGACGCCGGATGGTGAAGTTGAGCGTATTCAACGTGGAAGTTATATGG
GGCTCAATCATGGTCGAGTGGTAAATATTACCCCGACTCAAATTGATTTGATTGAGATTATTCCGGATGGGCGAGAAGGA
TATGTAGAGCGTCCTAGAAGTCTCATATTAATTGGACCAGCACCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76

100

0.76
  comL Acinetobacter baylyi ADP1

68.023

98.286

0.669