Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   MST16_RS15185 Genome accession   NZ_CP094541
Coordinates   3076744..3077466 (-) Length   240 a.a.
NCBI ID   WP_168378181.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3071744..3082466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS15165 (MST16_15135) aroB 3072422..3073504 (-) 1083 WP_180092207.1 3-dehydroquinate synthase -
  MST16_RS15170 (MST16_15140) aroK 3073519..3074064 (-) 546 WP_078189378.1 shikimate kinase AroK -
  MST16_RS15175 (MST16_15145) pilQ 3074101..3076203 (-) 2103 WP_180088921.1 type IV pilus secretin PilQ Machinery gene
  MST16_RS15180 (MST16_15150) pilP 3076220..3076747 (-) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  MST16_RS15185 (MST16_15155) pilO 3076744..3077466 (-) 723 WP_168378181.1 type 4a pilus biogenesis protein PilO Machinery gene
  MST16_RS15190 (MST16_15160) pilN 3077463..3078149 (-) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  MST16_RS15195 (MST16_15165) comM 3078149..3079207 (-) 1059 WP_078189383.1 pilus assembly protein PilM Machinery gene
  MST16_RS15200 (MST16_15170) ponA 3079373..3081913 (+) 2541 WP_180092204.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27227.95 Da        Isoelectric Point: 5.0197

>NTDB_id=670100 MST16_RS15185 WP_168378181.1 3076744..3077466(-) (pilO) [Acinetobacter sp. YH16040_T]
MSRDEFEQLNQDAVVIPKKKMTFDKFVQQFNTLDPNNYGSWPISVKITCWIFIIILVAILGYFLAIKGKIEAISSANAQE
QNLLNEFREKDSKLRNLQQYQLQLQDMEARFNQQLEQLPKETEIPGLVEDINLTGVNSGLKFKIIRLEPEVKQEFFTEQP
IRIEATGDYHAFGSFVSGIAGLSRIVTLHNLTITATENKEKNSDIPKIDYVISAKTYRYEGNTESAAKAADSASTQEAPK

Nucleotide


Download         Length: 723 bp        

>NTDB_id=670100 MST16_RS15185 WP_168378181.1 3076744..3077466(-) (pilO) [Acinetobacter sp. YH16040_T]
ATGAGTCGTGATGAATTTGAACAATTGAATCAAGATGCTGTTGTCATTCCGAAAAAGAAAATGACTTTTGATAAGTTTGT
ACAGCAGTTCAATACCTTAGATCCGAATAACTATGGTAGTTGGCCAATTTCAGTCAAAATTACCTGCTGGATTTTTATCA
TTATCCTTGTGGCAATTTTGGGCTATTTCTTGGCGATTAAAGGCAAGATTGAAGCTATTTCAAGTGCCAATGCACAAGAA
CAAAATTTGTTGAATGAATTTCGTGAAAAAGATTCAAAACTACGTAATTTGCAACAATATCAATTGCAGTTGCAGGATAT
GGAAGCACGTTTTAATCAACAATTAGAACAATTGCCGAAAGAAACTGAAATTCCAGGTTTGGTTGAAGATATCAACTTAA
CAGGCGTGAATTCTGGACTGAAATTTAAAATTATTCGTCTTGAACCTGAAGTGAAGCAAGAGTTCTTTACGGAACAGCCA
ATTCGTATTGAAGCAACGGGTGATTACCATGCCTTTGGTTCATTTGTTAGTGGCATTGCCGGGCTTTCACGGATTGTGAC
TTTGCATAATTTAACGATTACAGCAACTGAAAATAAAGAAAAGAACTCAGATATTCCAAAAATTGATTATGTCATTTCTG
CGAAAACATATCGTTACGAAGGAAATACTGAAAGTGCTGCGAAAGCTGCAGATTCAGCAAGTACACAGGAGGCTCCAAAA
TGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

68.201

99.583

0.679
  comO Acinetobacter baylyi ADP1

65.532

97.917

0.642