Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG410_RS15330 Genome accession   NZ_CP109031
Coordinates   3558340..3559020 (-) Length   226 a.a.
NCBI ID   WP_261708770.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00659 strain NBC 00659     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3553340..3564020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG410_RS15320 (OG410_15345) - 3555769..3556737 (+) 969 WP_329299653.1 hypothetical protein -
  OG410_RS15325 (OG410_15350) clpX 3556893..3558179 (-) 1287 WP_151471405.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG410_RS15330 (OG410_15355) clpP 3558340..3559020 (-) 681 WP_261708770.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG410_RS15335 (OG410_15360) clpP 3559138..3559743 (-) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG410_RS15340 (OG410_15365) tig 3560212..3561600 (-) 1389 WP_329299655.1 trigger factor -
  OG410_RS15355 (OG410_15380) - 3562350..3562544 (-) 195 WP_189314022.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24937.39 Da        Isoelectric Point: 4.6288

>NTDB_id=669627 OG410_RS15330 WP_261708770.1 3558340..3559020(-) (clpP) [Streptomyces sp. NBC_00659 strain NBC 00659]
MNDFPGSGLFARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=669627 OG410_RS15330 WP_261708770.1 3558340..3559020(-) (clpP) [Streptomyces sp. NBC_00659 strain NBC 00659]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAACTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATTTACGACACCATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTTCTCGCAGCCGGTACGCCTG
GCAAGCGCATGGCACTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGGCAGGTCTCGGAC
CTCGAGATCGCCGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACGACCCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCACTGGCCTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACTCCGCAGTCGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Lactococcus lactis subsp. cremoris KW2

45.729

88.053

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.724

88.053

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389