Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MRY16_RS01330 Genome accession   NZ_CP094445
Coordinates   286046..288172 (+) Length   708 a.a.
NCBI ID   WP_243484854.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281046..293172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS01310 (MRY16_01310) comM 283018..284076 (+) 1059 WP_243483867.1 pilus assembly protein PilM Machinery gene
  MRY16_RS01315 (MRY16_01315) pilN 284076..284720 (+) 645 WP_243483869.1 PilN domain-containing protein Machinery gene
  MRY16_RS01320 (MRY16_01320) pilO 284717..285457 (+) 741 WP_234856565.1 type 4a pilus biogenesis protein PilO Machinery gene
  MRY16_RS01325 (MRY16_01325) pilP 285457..285984 (+) 528 WP_243483872.1 pilus assembly protein PilP Machinery gene
  MRY16_RS01330 (MRY16_01330) pilQ 286046..288172 (+) 2127 WP_243484854.1 type IV pilus secretin PilQ family protein Machinery gene
  MRY16_RS01335 (MRY16_01335) aroK 288192..288752 (+) 561 WP_243483874.1 shikimate kinase AroK -
  MRY16_RS01340 (MRY16_01340) aroB 288773..289855 (+) 1083 WP_125299123.1 3-dehydroquinate synthase -
  MRY16_RS01345 (MRY16_01345) - 289872..290747 (+) 876 WP_125299122.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76911.27 Da        Isoelectric Point: 5.9981

>NTDB_id=669529 MRY16_RS01330 WP_243484854.1 286046..288172(+) (pilQ) [Acinetobacter junii strain A2-1]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSVNVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPTLISNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAIAQSVKLAPLQTEYIQLSYAKAVDIEKLITQGKNGSGNGNRNQGVNDLLGDS
VGSLLSPRGTVSIDPRTNTLIINDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGVNKNNDL
LVGGSDTTLWNLREEPNDRGGYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVLTA
DKQAAKIESGTQIPYSSSTGAGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPGTPTPTGQLTINKNTIDTN
VVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=669529 MRY16_RS01330 WP_243484854.1 286046..288172(+) (pilQ) [Acinetobacter junii strain A2-1]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGTGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTCGATAAGGCTCAGCAGAACTTAAAGCAAACGTCTATT
CCTGTTTCAACCAATGAGGCAAGTTCCGTCAATGTGGCTGCAGATGATCAGCGTGCACGTTTGATTGTAAATTTAAAAGA
CTCGGGTGCTTTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCTGCAAAACCAACATTAATCAGTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGTGTTTCCAATATTGGTTTTCAAAGAGGAAATCAAGGTGAGGGGTTA
GTTGTTATTGATTTATTGGGAGGTAATACACCAGTAGATGTACAGCAACAGGGGAGTAAAATTGTTGTTCGCACTCTTGG
AAATAAAATCCCAACTCACTTGGCCCGTCGTTTAAATACTAATGATTTTGCGACCCCAGTAGCAAGTATTGATGCTTATA
ATGATAAAGGAAATGGGGTTATTACTATTCAATCTGCGGGTAGTTATGAGTACATGGCTTATCAGGCAGAAAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAATCACCGAATAAAGCTAAACCACAAACTTATACTGGAAATAAAATTTCTTT
GGATTTCCAAGATATTGAAGTGCGCCGTGTTTTACAGTTGTTAGCAGACTTTACAGGAATCAATATGGTTGCTGCTGATA
CTGTGCAAGGAAATATTACGCTACGTCTTAAAGATGTTCCTTGGGATCAAGCGCTGGACATCGTATTAAAAACAAAAAAC
TTGGATAAGCGTCGTAATGGAAATGTAATTTGGATTGCACCTGTTACAGAGTTGATCAAAGCGGAAGAAGATGAGGCAAA
AGCAATCGCCCAAAGTGTGAAACTTGCACCTTTGCAAACAGAATATATCCAATTGAGTTATGCGAAAGCGGTAGATATTG
AGAAACTCATCACTCAAGGAAAAAATGGCTCTGGTAATGGTAATCGTAATCAGGGAGTTAATGATCTTTTAGGTGATAGT
GTGGGGAGTTTATTGAGCCCACGAGGAACTGTTTCGATTGACCCTCGCACTAATACATTGATTATAAATGATACTTCTCA
GAAAATTGATCAGATTCGTAAGATGATCGACTTGCTTGATGTATCGGTTAAACAAGTCATGATTGAAGCGCGTATTGTGC
GTGCGAGTACAGACTTTACCAAAGAGATGGGTGTAAAGTGGGGGATATTGTCACAAGGTGTAAATAAAAATAATGATTTG
CTCGTTGGCGGCAGTGATACAACTTTATGGAATTTGCGAGAAGAACCTAATGATAGAGGGGGGTATGATATTGAACGTCC
AGATAATCTGAATGTGAATTTAGGTGCTGTAACCCCTGGAGCAAGTCGTATTGCTTTTGGTTTAATTAGTCTTTCAGATT
TCATGTTGGACCTAGAGTTATCGGCTGTTCAGGCTGATGGTTATGGTGAAGTAATCTCAACTCCGAAAGTTCTAACCGCA
GATAAGCAAGCTGCAAAAATTGAATCAGGAACTCAAATTCCATACTCATCTTCTACTGGTGCTGGAGCAAATGCTGTTCC
CAAAACTGAATTTATTGATGCAACATTAAGTTTGGATGTTACACCGAGTATCACTCCTGAAGGTAAGGTGATGATGAAAT
TAAACATCACTAAAGACTCACCAGGAACGCCAACACCTACAGGGCAGTTGACGATTAATAAAAATACGATTGATACCAAT
GTTGTGGTTGATAATGGTGAAACTGTTGTTCTTGGTGGAATTTTTGAGCAAGAAAATATTAATTCTCAGACCAAAGTTCC
ATTCTTGGGTGATTTGCCTTATGTTGGGAAATTATTCCGTAGAGAGTCTAAACAAGACAATAAACGCGAGTTGCTTATTT
TTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-445)

Secretin and TonB N terminus short domain (STN)

(292-334)

AMIN domain (AMIN)

(37-122)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.344

100

0.773
  pilQ Acinetobacter baumannii strain A118

75.344

100

0.773
  comQ Acinetobacter baylyi ADP1

73.846

100

0.746
  pilQ Pseudomonas aeruginosa PAK

40.401

98.588

0.398
  pilQ Legionella pneumophila strain ERS1305867

39.435

94.915

0.374
  pilQ Legionella pneumophila strain Lp02

39.254

94.633

0.371

Multiple sequence alignment