Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   MRY16_RS01320 Genome accession   NZ_CP094445
Coordinates   284717..285457 (+) Length   246 a.a.
NCBI ID   WP_234856565.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 279717..290457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS01305 (MRY16_01305) ponA 280276..282855 (-) 2580 WP_243483865.1 penicillin-binding protein PBP1a -
  MRY16_RS01310 (MRY16_01310) comM 283018..284076 (+) 1059 WP_243483867.1 pilus assembly protein PilM Machinery gene
  MRY16_RS01315 (MRY16_01315) pilN 284076..284720 (+) 645 WP_243483869.1 PilN domain-containing protein Machinery gene
  MRY16_RS01320 (MRY16_01320) pilO 284717..285457 (+) 741 WP_234856565.1 type 4a pilus biogenesis protein PilO Machinery gene
  MRY16_RS01325 (MRY16_01325) pilP 285457..285984 (+) 528 WP_243483872.1 pilus assembly protein PilP Machinery gene
  MRY16_RS01330 (MRY16_01330) pilQ 286046..288172 (+) 2127 WP_243484854.1 type IV pilus secretin PilQ family protein Machinery gene
  MRY16_RS01335 (MRY16_01335) aroK 288192..288752 (+) 561 WP_243483874.1 shikimate kinase AroK -
  MRY16_RS01340 (MRY16_01340) aroB 288773..289855 (+) 1083 WP_125299123.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27803.38 Da        Isoelectric Point: 4.6196

>NTDB_id=669527 MRY16_RS01320 WP_234856565.1 284717..285457(+) (pilO) [Acinetobacter junii strain A2-1]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASQDTTKKSDIPVVNYSVKAKTYRYVGADDAVNTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=669527 MRY16_RS01320 WP_234856565.1 284717..285457(+) (pilO) [Acinetobacter junii strain A2-1]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTC
TAGCTGTTTTAGCACTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAATTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTACCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCAGGGTTGAAGTTTAAAAACATTCGCTTGGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATTGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACAGGTATTGCGGCATTGCCTCGAATTGTAACTTT
ACACGATTTCACGGTTGAAGCATCACAAGATACGACGAAGAAGTCAGATATTCCTGTTGTGAATTACTCCGTTAAGGCAA
AAACCTACCGTTATGTGGGTGCTGATGATGCAGTAAATACTGAGGTTGGAGCGGCGGTGCCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.065

100

0.724
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683

Multiple sequence alignment