Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG936_RS10415 Genome accession   NZ_CP108846
Coordinates   2254323..2255003 (-) Length   226 a.a.
NCBI ID   WP_383756184.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00846     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2249323..2260003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG936_RS10405 (OG936_10430) - 2251774..2252790 (+) 1017 WP_406494084.1 hypothetical protein -
  OG936_RS10410 (OG936_10435) clpX 2252867..2254165 (-) 1299 WP_383756186.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG936_RS10415 (OG936_10440) clpP 2254323..2255003 (-) 681 WP_383756184.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG936_RS10420 (OG936_10445) - 2255085..2255693 (-) 609 WP_406500390.1 ATP-dependent Clp protease proteolytic subunit -
  OG936_RS10425 (OG936_10450) tig 2255957..2257372 (-) 1416 WP_406494086.1 trigger factor -
  OG936_RS10440 (OG936_10465) - 2257985..2258179 (-) 195 WP_266746187.1 hypothetical protein -
  OG936_RS10445 (OG936_10470) - 2258660..2259814 (+) 1155 WP_406494088.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24753.15 Da        Isoelectric Point: 4.6883

>NTDB_id=667470 OG936_RS10415 WP_383756184.1 2254323..2255003(-) (clpP) [Streptomyces sp. NBC_00846]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKIRDDIERDKILTAEEALAYGLVDQIVSTRKSAATAA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=667470 OG936_RS10415 WP_383756184.1 2254323..2255003(-) (clpP) [Streptomyces sp. NBC_00846]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGATA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCGGGTACGC
CCGGCAAGCGGATGGCGCTGCCCAACGCCCGGGTACTGATCCACCAGCCGTCCTCGCAGACCGGCCGGGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
GCTGGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGAAGCCCTCGCCTACGGTCTCGTCGACC
AGATCGTGTCGACCCGCAAGAGTGCGGCCACGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.677

83.628

0.407
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.513

0.385
  clpP Streptococcus thermophilus LMG 18311

44.845

85.841

0.385
  clpP Streptococcus thermophilus LMD-9

44.845

85.841

0.385
  clpP Streptococcus pyogenes JRS4

45.789

84.071

0.385
  clpP Streptococcus pyogenes MGAS315

45.789

84.071

0.385
  clpP Streptococcus pneumoniae Rx1

44.792

84.956

0.381
  clpP Streptococcus pneumoniae D39

44.792

84.956

0.381
  clpP Streptococcus pneumoniae R6

44.792

84.956

0.381
  clpP Streptococcus pneumoniae TIGR4

44.792

84.956

0.381
  clpP Streptococcus mutans UA159

45.263

84.071

0.381
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

84.513

0.381