Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG214_RS26270 Genome accession   NZ_CP108806
Coordinates   6128597..6129202 (+) Length   201 a.a.
NCBI ID   WP_169922671.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00872     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 6123597..6134202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG214_RS26245 (OG214_26255) - 6124179..6125402 (-) 1224 WP_405986143.1 cation:proton antiporter -
  OG214_RS26250 (OG214_26260) - 6125860..6126054 (+) 195 WP_363080975.1 hypothetical protein -
  OG214_RS26265 (OG214_26275) tig 6126726..6128129 (+) 1404 WP_405986144.1 trigger factor -
  OG214_RS26270 (OG214_26280) clpP 6128597..6129202 (+) 606 WP_169922671.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG214_RS26275 (OG214_26285) clpP 6129252..6129932 (+) 681 WP_363086095.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG214_RS26280 (OG214_26290) clpX 6130134..6131426 (+) 1293 WP_066949776.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG214_RS26285 (OG214_26295) - 6131520..6132128 (-) 609 WP_383033340.1 Uma2 family endonuclease -
  OG214_RS26290 (OG214_26300) - 6132260..6133213 (-) 954 WP_405986145.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21158.95 Da        Isoelectric Point: 4.5022

>NTDB_id=667056 OG214_RS26270 WP_169922671.1 6128597..6129202(+) (clpP) [Streptomyces sp. NBC_00872]
MPYAAGEPSLGGGLGDQVYSRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIFLYINSPGGSVTAGMAVYDTMQY
IPNDVVTIGMGLAASMGQFLLTGGTAGKRFALPHTDILMHQGSAGLGGTASDIKIQAEQLLRTKKRMAEITARHTGQSEE
TIIRDGDRDRWFTAEEAKDYGIIDEIISAASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=667056 OG214_RS26270 WP_169922671.1 6128597..6129202(+) (clpP) [Streptomyces sp. NBC_00872]
ATGCCTTACGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGGCTGCTCGGAGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCGAACAAGATCACGGCGCAGCTCCTCCTCCTCGCGGCCGAGCCCG
AGAAGGACATCTTCCTTTACATCAACAGCCCCGGCGGGTCCGTGACGGCCGGTATGGCCGTCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTGACCATCGGTATGGGTCTCGCCGCCTCGATGGGCCAGTTCCTGCTGACCGGTGGCACGGCGGG
CAAGCGCTTCGCGCTGCCGCACACCGACATCCTCATGCACCAGGGCTCCGCGGGCCTCGGTGGCACCGCCTCCGACATCA
AGATCCAGGCCGAGCAGCTTCTGCGTACCAAGAAGCGCATGGCCGAGATCACCGCCCGCCACACCGGGCAGTCGGAGGAG
ACGATCATCCGCGACGGTGACCGCGACCGCTGGTTCACCGCCGAGGAGGCCAAGGACTACGGCATCATCGACGAGATCAT
CTCCGCTGCTTCGGGCGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

50.532

93.532

0.473
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.738

95.025

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50

93.532

0.468
  clpP Bacillus subtilis subsp. subtilis str. 168

54.651

85.572

0.468
  clpP Streptococcus mutans UA159

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

48.588

88.06

0.428
  clpP Streptococcus pneumoniae Rx1

48.588

88.06

0.428
  clpP Streptococcus pneumoniae R6

48.588

88.06

0.428
  clpP Streptococcus pneumoniae TIGR4

48.588

88.06

0.428
  clpP Streptococcus pyogenes JRS4

49.711

86.07

0.428
  clpP Streptococcus pyogenes MGAS315

49.711

86.07

0.428
  clpP Streptococcus thermophilus LMG 18311

48.851

86.567

0.423
  clpP Streptococcus thermophilus LMD-9

48.851

86.567

0.423