Detailed information NTG0667058

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG214_RS26280
• Genome accession: NZ_CP108806
• Coordinates: 6130134..6131426 (+)
• Length: 430 a.a.
• NCBI ID: WP_066949776.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00872
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6125134..6136426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG214_RS26250 (OG214_26260)	-	6125860..6126054 (+)	195	WP_363080975.1	hypothetical protein	-
OG214_RS26265 (OG214_26275)	tig	6126726..6128129 (+)	1404	WP_405986144.1	trigger factor	-
OG214_RS26270 (OG214_26280)	clpP	6128597..6129202 (+)	606	WP_169922671.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG214_RS26275 (OG214_26285)	clpP	6129252..6129932 (+)	681	WP_363086095.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG214_RS26280 (OG214_26290)	clpX	6130134..6131426 (+)	1293	WP_066949776.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG214_RS26285 (OG214_26295)	-	6131520..6132128 (-)	609	WP_383033340.1	Uma2 family endonuclease	-
OG214_RS26290 (OG214_26300)	-	6132260..6133213 (-)	954	WP_405986145.1	hypothetical protein	-
OG214_RS26295 (OG214_26305)	-	6133350..6135971 (+)	2622	WP_405986146.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 430 a.a.
• Molecular weight: 47082.95 Da
• Isoelectric Point: 4.8363

>NTDB_id=667058 OG214_RS26280 WP_066949776.1 6130134..6131426(+) (clpX) [Streptomyces sp. NBC_00872]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGETGGASGREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAILEEVLQSVMYEVPSRKDVARVVIT
AEVVRDNVNPTLVPREPRIVKNDGRHEKSA

Nucleotide

• Length: 1293 bp

>NTDB_id=667058 OG214_RS26280 WP_066949776.1 6130134..6131426(+) (clpX) [Streptomyces sp. NBC_00872]
GTGGCACGCATCGGTGATGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGGAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGTCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTGGCGGAGACCT
CCGAGGTGCGGTGGGAGGAACTGCCCAAGCCTCGTGAGATCTACGAGTTCCTGGAGGGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCCCTCTCGGTGGCGGTGTACAACCACTACAAGCGTGTGCAGGCCGGGGAGACCGGTGGCGCGTCCGGACG
TGAGGACGCGATCGAGCTGGCGAAGTCGAACATCCTGCTGCTGGGCCCGACCGGCTCCGGCAAGACGCTCCTCGCCCAGA
CGCTCGCCCGCATGCTGAACGTACCGTTCGCCATCGCGGACGCGACGGCGCTCACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATTCTGCTGAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGTGATGTATCGGGTGAGGGTGTCCAGCAGGCGC
TGCTGAAGATCCTGGAGGGCACGACGGCCTCCGTACCGCCGCAGGGCGGACGCAAGCACCCGCATCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCGTTCGCCGGTCTGGAGAAGATCATCGAGTCGCGGGCGGGCGC
GAAGGGGATCGGCTTCGGGGCGACGATCCGCTCGAAGCGGGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGGCTGCCCGTGCTGACCTCCGTCCACAACCTGGACCGC
GAGGCGCTGCTCCAGATCCTGGTCGAGCCGCGCAACGCGCTGGTGAAGCAGTATCAGCGGCTCTTCGAACTCGACGGTGT
GGAACTGGACTTCGACCGCCCGGCCCTGGAGGCGATCGCCGACCAGGCGATCCTGCGCGGCACGGGCGCGCGCGGTCTGC
GCGCGATCCTCGAAGAGGTGCTCCAGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGGGTCGTCATCACG
GCGGAGGTCGTCCGGGACAATGTGAACCCGACGCTGGTTCCGCGGGAGCCGAGGATCGTGAAGAACGACGGCCGCCACGA
GAAGTCGGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.488	0.595
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.641	95.814	0.514