Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG80_RS06855 Genome accession   NZ_CP094115
Coordinates   1436726..1438039 (-) Length   437 a.a.
NCBI ID   WP_245055436.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe068     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431726..1443039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG80_RS06825 (MPG80_06825) nadC 1432189..1433010 (-) 822 WP_245055432.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG80_RS06830 (MPG80_06830) nadA 1433010..1434020 (-) 1011 WP_120918311.1 quinolinate synthase NadA -
  MPG80_RS06835 (MPG80_06835) - 1434007..1434813 (-) 807 WP_154501705.1 phosphatidylserine decarboxylase -
  MPG80_RS06840 (MPG80_06840) - 1434810..1435313 (-) 504 WP_000953079.1 hypothetical protein -
  MPG80_RS06845 (MPG80_06845) - 1435326..1435820 (-) 495 WP_000544981.1 hypothetical protein -
  MPG80_RS06850 (MPG80_06850) mqnP 1435813..1436697 (-) 885 WP_245055434.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG80_RS06855 (MPG80_06855) comEC/comE3 1436726..1438039 (-) 1314 WP_245055436.1 ComEC/Rec2 family competence protein Machinery gene
  MPG80_RS06860 (MPG80_06860) - 1438036..1439496 (-) 1461 WP_245055438.1 replicative DNA helicase -
  MPG80_RS06865 (MPG80_06865) - 1439507..1440901 (-) 1395 WP_245055440.1 NAD(P)H-hydrate dehydratase -
  MPG80_RS06870 (MPG80_06870) crdS 1440904..1442106 (-) 1203 WP_075653460.1 copper-sensing histidine kinase CrdS -
  MPG80_RS06875 (MPG80_06875) crdR 1442072..1442713 (-) 642 WP_140446110.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50289.23 Da        Isoelectric Point: 9.8315

>NTDB_id=667058 MPG80_RS06855 WP_245055436.1 1436726..1438039(-) (comEC/comE3) [Helicobacter pylori strain Hpfe068]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANVLGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFWVRSFQVISLS
ALVFLNMFIITHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=667058 MPG80_RS06855 WP_245055436.1 1436726..1438039(-) (comEC/comE3) [Helicobacter pylori strain Hpfe068]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCCTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGATAGGGCTAATGTGCTAGGGATTAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTGGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGTTCATCATTACGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTATTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTGAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment