Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG496_RS21590 Genome accession   NZ_CP108730
Coordinates   4748016..4748696 (-) Length   226 a.a.
NCBI ID   WP_365300432.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00988     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4743016..4753696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG496_RS21580 (OG496_21520) - 4745471..4746484 (+) 1014 WP_405972041.1 hypothetical protein -
  OG496_RS21585 (OG496_21525) clpX 4746569..4747855 (-) 1287 WP_033285988.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG496_RS21590 (OG496_21530) clpP 4748016..4748696 (-) 681 WP_365300432.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG496_RS21595 (OG496_21535) clpP 4748747..4749349 (-) 603 WP_365300841.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG496_RS21600 (OG496_21540) tig 4749719..4751098 (-) 1380 WP_405972042.1 trigger factor -
  OG496_RS21615 (OG496_21555) - 4751688..4751882 (-) 195 WP_026151384.1 hypothetical protein -
  OG496_RS21620 (OG496_21560) - 4752186..4753292 (+) 1107 WP_405972043.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25028.40 Da        Isoelectric Point: 4.6547

>NTDB_id=665880 OG496_RS21590 WP_365300432.1 4748016..4748696(-) (clpP) [Streptomyces sp. NBC_00988]
MNDFPGNGLYEHARAEYTGPAAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDLLAKHSKTPIDKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=665880 OG496_RS21590 WP_365300432.1 4748016..4748696(-) (clpP) [Streptomyces sp. NBC_00988]
GTGAACGACTTCCCCGGCAACGGCCTGTACGAGCACGCACGCGCCGAATACACGGGTCCCGCCGCCGAGTCCCGTTACGT
GATCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCGATCTACATCAACAGCCCGGGCGGCTCCTTCACGGCCCTGACTGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCGTCCGCCGCCGCCGTCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACGGGTCGGGGCCAGGTCTCCGAC
CTCGAAATCGCGGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAGGACCTGCTGGCCAAGCACTCGAAGACGCCGAT
CGACAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTGTCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

83.186

0.425
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

43.878

86.726

0.381
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.857

86.726

0.372