Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SCSC_RS07470 Genome accession   NZ_AP014647
Coordinates   1517848..1519827 (-) Length   659 a.a.
NCBI ID   WP_006270242.1    Uniprot ID   A0AAD2SVR6
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512848..1524827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS07450 (SCSC_1531) amiF 1513052..1513975 (-) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  SCSC_RS07455 (SCSC_1532) amiE 1513986..1515053 (-) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  SCSC_RS07460 (SCSC_1533) amiD 1515062..1515988 (-) 927 WP_006270263.1 oligopeptide ABC transporter permease OppC Regulator
  SCSC_RS07465 (SCSC_1534) amiC 1515988..1517484 (-) 1497 WP_006268182.1 ABC transporter permease Regulator
  SCSC_RS07470 (SCSC_1535) amiA3 1517848..1519827 (-) 1980 WP_006270242.1 peptide ABC transporter substrate-binding protein Regulator
  SCSC_RS07475 (SCSC_1536) amiA3 1520023..1521999 (-) 1977 WP_006270291.1 peptide ABC transporter substrate-binding protein Regulator
  SCSC_RS07480 (SCSC_1537) - 1522159..1522848 (-) 690 WP_022524557.1 phenylalanine--tRNA ligase beta subunit-related protein -
  SCSC_RS07485 (SCSC_1538) - 1523070..1524683 (-) 1614 WP_006270281.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73257.98 Da        Isoelectric Point: 8.3277

>NTDB_id=66581 SCSC_RS07470 WP_006270242.1 1517848..1519827(-) (amiA3) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKKSKIIALAAVTLLTAGALTACSGSKTSSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRYGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVAGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSSVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSLLYNGPYLLKSITAKSSVELAKNPNYWDK
KNVHIDNIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKNFGELVKEKLVGYDESWKNVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDIIKPSSGESTKTYLGFDAGTNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQDQYKKAMIKWN
KERSKSNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=66581 SCSC_RS07470 WP_006270242.1 1517848..1519827(-) (amiA3) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAGAAAAGTAAAATCATTGCTTTAGCGGCTGTTACCCTACTTACAGCAGGAGCCTTAACGGCTTGTTCTGGCTCTAA
AACAAGTTCTAGCAACAAAACATTTTCATATGTTTATGAGCAAGATCCAGATAATTTGGATTATTTGACAACTGGGAAGG
CCTCTACTTCAAATATTACAAGTAATGTCATTGATGGACTTTTAGAAAATGACCGTTACGGAAATTTAATCCCTTCTGTG
GCAAAAGATTGGACGGTTTCCAAAGATGGCTTGACTTACACTTATAAACTTCGTAAAGGTGTCAAATGGTATACATCCGA
AGGTGAAGAGTATGCCGAAGTCAAAGCGCAAGACTTTGTGGCTGGTTTGAAACACGCTGCAGATAAGAAATCCGATGCTA
TTTATTTGGTACAAGATTCAATCAAAGGCCTGGATGCTTACATGAAGGGTGAAAATAAAGATTTCTCTTCTGTCGGTATC
AAAGCGGTTGATGATTATACGGTTCAATATACTCTGAATCGACCAGAAAGCTTTTGGAATTCAAAGACTACGATGGGGGT
TTTAGCGCCAGTTAATGCAGAATTTTTGAAATCAAAAGGAAATAAATTTGCACAAGCAACAGACCCATCTAGTCTTCTTT
ATAATGGACCATACTTGCTAAAATCTATCACTGCAAAATCATCTGTTGAATTGGCTAAAAATCCAAACTATTGGGATAAG
AAAAATGTACACATTGATAACATCAAATTGTCTTACTATGATGGTCAAGACCAAGATAAACTTGCTAAAGGATTTAGTGA
CGGTTCATTTACCAATGCAAAAGTATTTCCAACTAGTCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACCACTTATCTAGTGGCTACAAACATCGATCGTCAATCTTACAATCATACATCAAAGACA
ACAGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTCCGTCAAGCAATTACATTTGCATTTGACCG
CACAGCTTATGCGTCACAAGTAAATGGGAAAGATGGTGCGACGAAGATGCTTCGTAATCTCTTTGTACCACCAACTTTTG
TTCAAACAGATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTCGGCTACGATGAAAGTTGGAAAAATGTCAAC
TTAAATGATGCGCAAGACGGTCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCCAAAGCGAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCAATCCACATTGACATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAAAATCTTGGCAAAGAAAATGTTGTGATTGACATTCAACAAATGTCTAAAGACGATGTAAAT
AATATCACTTACTTTGCTGAATCTGCAGCTGCAGAAGATTGGGATCTTTCTGATAATGTTGGTTGGAGTCCAGACTTCCA
AGATCCATCTACCTATCTTGATATCATCAAACCTTCAAGCGGTGAAAGCACAAAGACTTATCTAGGATTTGATGCAGGTA
CAAATAACGCTGCAGCAGCACAAGTCGGTATGAACGAATATGAAAAGCTGTTGAACGAGGCTGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCGGCAGCCCAAGCTTGGTTGACTGATAATGCATTAGTTATTCCAACAACAACGCT
AACGGGTCGCCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAATATCTTGAACTCCAAGATGAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGATTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.515

100

0.616
  amiA Streptococcus salivarius strain HSISS4

61.212

100

0.613
  amiA3 Streptococcus thermophilus LMG 18311

60.909

100

0.61

Multiple sequence alignment