Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SCSC_RS07450 Genome accession   NZ_AP014647
Coordinates   1513052..1513975 (-) Length   307 a.a.
NCBI ID   WP_003070566.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508052..1518975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS07435 (SCSC_1528) - 1509563..1511017 (+) 1455 WP_006270225.1 sucrose-6-phosphate hydrolase -
  SCSC_RS07440 (SCSC_1529) - 1510998..1511963 (+) 966 WP_006270237.1 LacI family DNA-binding transcriptional regulator -
  SCSC_RS07445 (SCSC_1530) - 1512048..1512866 (-) 819 WP_006270209.1 Cof-type HAD-IIB family hydrolase -
  SCSC_RS07450 (SCSC_1531) amiF 1513052..1513975 (-) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  SCSC_RS07455 (SCSC_1532) amiE 1513986..1515053 (-) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  SCSC_RS07460 (SCSC_1533) amiD 1515062..1515988 (-) 927 WP_006270263.1 oligopeptide ABC transporter permease OppC Regulator
  SCSC_RS07465 (SCSC_1534) amiC 1515988..1517484 (-) 1497 WP_006268182.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34778.95 Da        Isoelectric Point: 6.3204

>NTDB_id=66577 SCSC_RS07450 WP_003070566.1 1513052..1513975(-) (amiF) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSKGDIFFDGKRINGKKSKE
EESEVIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDAAQHDYSVDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=66577 SCSC_RS07450 WP_003070566.1 1513052..1513975(-) (amiF) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAAGGAAGCAAGAAATTTGTTGCTGTAAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCCGGCTCTGGTAAGACAACAATCGGTCGTG
CCATTATTGGTTTGAACGATACTAGCAAGGGAGATATCTTCTTTGATGGAAAGAGAATCAATGGTAAGAAATCAAAAGAG
GAAGAATCAGAAGTGATTCGCAAGATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATTATTTCAGAGGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAGGTGAAAGATATTA
TTCATGAGGTGGGGTTGTTGTCAGAGCATTTGACCCGCTATCCGCATGAATTTTCTGGTGGTCAGCGTCAACGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAGCCAGATTTTGTGATTGCAGATGAGCCGATTTCAGCACTTGACGTTTCTGTGCGCGC
ACAAGTTTTGAATCTTCTTAAGAAATTCCAAAAAGATCTAGGCTTGACTTATCTTTTCATTGCCCATGATTTATCAGTTG
TACGTTTTATCTCAGACCGTATTGCTGTTATTTATAAGGGTGTGATTGTAGAAGTGGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACGCAGTCATTGCTATCTGCTGTCCCAATTCCAGACCCAATATTGGAGCGGAAGAAAGTATT
GAAGGTTTATGATGCTGCTCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCAGGACACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.255

99.674

0.87
  amiF Streptococcus salivarius strain HSISS4

87.255

99.674

0.87
  amiF Streptococcus thermophilus LMD-9

86.928

99.674

0.866

Multiple sequence alignment