Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SCSC_RS07460 Genome accession   NZ_AP014647
Coordinates   1515062..1515988 (-) Length   308 a.a.
NCBI ID   WP_006270263.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510062..1520988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS07440 (SCSC_1529) - 1510998..1511963 (+) 966 WP_006270237.1 LacI family DNA-binding transcriptional regulator -
  SCSC_RS07445 (SCSC_1530) - 1512048..1512866 (-) 819 WP_006270209.1 Cof-type HAD-IIB family hydrolase -
  SCSC_RS07450 (SCSC_1531) amiF 1513052..1513975 (-) 924 WP_003070566.1 ATP-binding cassette domain-containing protein Regulator
  SCSC_RS07455 (SCSC_1532) amiE 1513986..1515053 (-) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  SCSC_RS07460 (SCSC_1533) amiD 1515062..1515988 (-) 927 WP_006270263.1 oligopeptide ABC transporter permease OppC Regulator
  SCSC_RS07465 (SCSC_1534) amiC 1515988..1517484 (-) 1497 WP_006268182.1 ABC transporter permease Regulator
  SCSC_RS07470 (SCSC_1535) amiA3 1517848..1519827 (-) 1980 WP_006270242.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34507.57 Da        Isoelectric Point: 9.8589

>NTDB_id=66579 SCSC_RS07460 WP_006270263.1 1515062..1515988(-) (amiD) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATMINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTVKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=66579 SCSC_RS07460 WP_006270263.1 1515062..1515988(-) (amiD) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCGCCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCCCAATATTGGTTTGGTACAGATAGTAACGGAAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCATGATTAACCTTGTGATTGGTATTGTTATTGGTGGTATCTGGGGAA
TTTCAAAGACTGTCGATCGTGTGATGATTGAGATTTATAATATCATTTCTAACATTCCACCGCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCTATGACCATCACTGGTTGGATTGGGATTGCTTACAA
TATTCGTATCCAAATTCTACGTTATCGTGATTTAGAGTATAACCTTGCCAGTCGCACTTTGGGAACACCGACTGTTAAAA
TCATTGTAAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTGACAACTGCTTCACAATTACTTCCAAGTTTCATTTCA
TACGAAGCCTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCGGATTATTC
ACAAAATGTTACAACAAATGCATATCTTTTCTGGATTCCATTAACAACGTTGATTTTGGTTTCCCTTTCCCTATTCGTTG
TCGGTCAGAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834

Multiple sequence alignment