Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SCSC_RS07475 Genome accession   NZ_AP014647
Coordinates   1520023..1521999 (-) Length   658 a.a.
NCBI ID   WP_006270291.1    Uniprot ID   A0AAD2SVV8
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515023..1526999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS07460 (SCSC_1533) amiD 1515062..1515988 (-) 927 WP_006270263.1 oligopeptide ABC transporter permease OppC Regulator
  SCSC_RS07465 (SCSC_1534) amiC 1515988..1517484 (-) 1497 WP_006268182.1 ABC transporter permease Regulator
  SCSC_RS07470 (SCSC_1535) amiA3 1517848..1519827 (-) 1980 WP_006270242.1 peptide ABC transporter substrate-binding protein Regulator
  SCSC_RS07475 (SCSC_1536) amiA3 1520023..1521999 (-) 1977 WP_006270291.1 peptide ABC transporter substrate-binding protein Regulator
  SCSC_RS07480 (SCSC_1537) - 1522159..1522848 (-) 690 WP_022524557.1 phenylalanine--tRNA ligase beta subunit-related protein -
  SCSC_RS07485 (SCSC_1538) - 1523070..1524683 (-) 1614 WP_006270281.1 CTP synthase -
  SCSC_RS07490 (SCSC_1539) rpoE 1524927..1525514 (-) 588 WP_006270287.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72276.86 Da        Isoelectric Point: 8.7817

>NTDB_id=66582 SCSC_RS07475 WP_006270291.1 1520023..1521999(-) (amiA3) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKKSKIIAVAGVALLTAGLLTACSGSKSNSAETKFGYVYSGDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDSIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGSGTAALALNIDRQSYNHTAKK
TDEEKNSTKKALLNKDFRQALNFALDRESYAAQVNGKDGAATAIRNMFVPSNFVQVGEKSFSDVVEEKLASYGDDWKGVK
LADSQNGLYNPTKAKAKFAKAKEALQAQGVKFPIHLDVPVVETSKSYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NVTYYAPNAAGEDWDISGAVGWSPDYQDPSTYLDILKSTASDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTN
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSSTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKAESNKKAQDELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=66582 SCSC_RS07475 WP_006270291.1 1520023..1521999(-) (amiA3) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAAAAAAGTAAAATTATTGCAGTAGCAGGGGTAGCCCTACTAACTGCTGGTTTGTTAACAGCTTGCTCGGGTTCGAA
ATCAAACTCAGCTGAAACAAAATTTGGTTATGTGTATTCTGGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGTGAAGAATATGCTGAAGTCAAGGCGCAAGATTTTGTAACTGGACTGAAACATGCTGCCGATAAAAAATCTGAGGCTC
TTTATTTGGTTCAAAACTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGACTTTTCAACGGTAGGTGTG
AAAGCGGTTGATGACTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCAGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGACCCTAACTCAATCCTTT
ATAATGGACCATTCTTGATGAAAGCTATCACAGCAAAATCTGCGGTAGAATATGTTAAAAACAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAGCATTAAACTTGCTTACTATGATGGTCAAGACCAGGACTCATTGGCTCGTAATTTCAAAGA
TGGGGCATACTCATACGCACGCCTCTTCCCAACAAGTTCAAACTTTGCAACTTTTGAAAAACAATTCAAGGACAATATCT
ATACAGCAGAAGCAGGCTCTGGAACGGCTGCTTTAGCCCTTAATATTGACCGTCAATCTTACAACCATACGGCTAAGAAA
ACAGATGAAGAAAAAAATTCAACGAAAAAGGCATTGTTGAACAAAGACTTCCGTCAAGCTTTGAACTTTGCACTTGACCG
CGAATCTTATGCAGCACAAGTAAATGGTAAAGATGGTGCTGCCACAGCAATCCGTAATATGTTTGTACCATCTAATTTTG
TTCAAGTTGGTGAAAAATCATTTAGTGATGTTGTAGAAGAAAAATTAGCAAGCTATGGCGATGACTGGAAGGGTGTCAAG
CTAGCTGATTCACAAAATGGCTTGTACAATCCAACAAAAGCAAAAGCAAAATTTGCAAAAGCAAAAGAAGCTTTGCAAGC
TCAAGGTGTGAAATTCCCAATCCACTTAGACGTTCCTGTTGTAGAAACTTCTAAGAGCTACGTTGCTCGGATGCAGTCTT
TAAAACAATCTGTTGAAAAAGTACTCGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGACGACTTTAAT
AACGTCACTTACTATGCTCCAAATGCAGCTGGAGAAGACTGGGATATTTCAGGTGCTGTTGGTTGGAGTCCTGATTATCA
AGATCCATCTACTTATCTTGATATTTTGAAATCAACGGCTTCTGACAATACGAAGACTTGGTTTGGTTTTGACTCTGGTA
GTGAAAATGCCGGTGCTAAAGCAGTAGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAAAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCGCTTGTCTTGCCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTCAA
CCTATTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGCCGAGTCTAATAAAAAAGCTCAAGATGAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

63.885

100

0.64
  amiA3 Streptococcus thermophilus LMG 18311

63.733

100

0.638
  amiA Streptococcus salivarius strain HSISS4

62.766

100

0.628

Multiple sequence alignment