Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MOP87_RS19625 Genome accession   NZ_CP093940
Coordinates   4382375..4383640 (-) Length   421 a.a.
NCBI ID   WP_042138980.1    Uniprot ID   A0AAW4D0J0
Organism   Pseudomonas sp. I3-I5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4377375..4388640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP87_RS19610 (MOP87_19610) - 4379050..4380639 (-) 1590 WP_242809909.1 AAA family ATPase -
  MOP87_RS19615 (MOP87_19615) aroB 4380655..4381752 (-) 1098 WP_110606388.1 3-dehydroquinate synthase -
  MOP87_RS19620 (MOP87_19620) aroK 4381852..4382370 (-) 519 WP_027913510.1 shikimate kinase AroK -
  MOP87_RS19625 (MOP87_19625) pilQ 4382375..4383640 (-) 1266 WP_042138980.1 secretin N-terminal domain-containing protein Machinery gene
  MOP87_RS19630 (MOP87_19630) - 4383564..4384580 (-) 1017 WP_088522832.1 pilus assembly protein PilP -
  MOP87_RS19635 (MOP87_19635) - 4384577..4385113 (-) 537 WP_110606387.1 PilN domain-containing protein -
  MOP87_RS19640 (MOP87_19640) pilM 4385110..4385991 (-) 882 WP_110606386.1 pilus assembly protein PilM -
  MOP87_RS19645 (MOP87_19645) - 4386167..4388617 (+) 2451 WP_027913506.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46034.58 Da        Isoelectric Point: 5.0888

>NTDB_id=665759 MOP87_RS19625 WP_042138980.1 4382375..4383640(-) (pilQ) [Pseudomonas sp. I3-I5]
MSKTWKWLLATLLLPLTAMAAPYQGERLSLNFQDVEVRAVLQVLADHAGINLVASDDVQGSVTLRLEDVPWDQAIDLVLR
SKGLGRRHEGNVLLIAPLSTLSAQSFEGTSNPLDTQSQPMRRELMRIHYAKAADLSELLLASLSEDGILAGRGSLGVDER
TNTLVVHQPANRLAEIRQLIAQLDVPVRQVAIEARIVEANVDYQKGLGVRWGGDLYSAAPRAGKDLFVDLGVERGGSSLG
VGLLRGDVLLDLELSAMEKSGEGEIISQPKVVTADKETARILKGTEVPYQQSNKNGATTVSFREASLSLEVTPQITPDDS
VVMTVRVTKDEPDYVNALNDVPPIRKNEVNAKVRVENGQTIVIGGVYSTTQNNVVDKVPFFGDLPYVGRLFRRDVLQEKK
SELLVFLTPRIMSDQTIAVSR

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=665759 MOP87_RS19625 WP_042138980.1 4382375..4383640(-) (pilQ) [Pseudomonas sp. I3-I5]
ATGAGCAAGACATGGAAATGGCTATTGGCAACCCTGCTGCTGCCGTTGACGGCAATGGCGGCCCCTTACCAGGGTGAGCG
GCTGTCACTGAATTTTCAGGATGTCGAGGTACGCGCCGTGCTGCAGGTGCTTGCCGATCATGCCGGCATCAACCTGGTCG
CCAGCGACGACGTACAAGGGAGCGTCACCTTGCGACTGGAAGATGTGCCTTGGGATCAAGCGATCGACCTGGTATTGCGC
AGCAAGGGCCTGGGTCGACGCCACGAAGGCAACGTGCTGCTGATCGCACCGCTTTCTACCCTGAGCGCGCAGTCGTTCGA
GGGCACCTCGAACCCACTCGACACGCAATCACAACCCATGCGTCGGGAACTGATGCGTATCCACTACGCCAAGGCCGCCG
ATTTGTCCGAGCTGTTACTGGCGAGCCTGTCTGAGGACGGCATTCTTGCCGGCAGGGGCAGCCTGGGCGTGGATGAGCGC
ACCAACACGCTGGTGGTCCACCAGCCGGCGAATCGACTCGCCGAGATTCGGCAACTGATCGCCCAATTGGATGTGCCCGT
GCGTCAGGTAGCGATCGAGGCCCGTATCGTGGAGGCCAACGTCGACTACCAGAAAGGCCTGGGGGTGAGATGGGGCGGCG
ACCTGTACAGCGCCGCACCGAGAGCGGGCAAGGACCTGTTCGTTGACCTGGGCGTCGAGCGGGGCGGCAGCAGCCTTGGC
GTTGGTCTGTTGCGCGGCGACGTGCTCCTTGACCTTGAGCTCAGTGCCATGGAAAAGAGCGGTGAGGGCGAGATCATCTC
CCAGCCCAAGGTAGTGACCGCCGACAAGGAGACGGCGCGGATACTCAAAGGTACCGAGGTGCCTTACCAGCAGTCCAACA
AGAATGGCGCGACAACCGTGTCGTTTCGCGAAGCCTCGCTTTCACTGGAGGTGACGCCGCAGATCACGCCGGATGACAGT
GTCGTCATGACCGTGAGAGTGACCAAGGACGAACCTGACTACGTCAATGCCCTCAATGACGTCCCGCCCATTCGCAAGAA
CGAGGTCAATGCCAAGGTCAGGGTCGAGAACGGGCAGACTATCGTGATCGGTGGCGTCTACTCCACCACGCAAAACAATG
TAGTGGACAAGGTGCCATTTTTTGGCGATCTGCCGTATGTTGGACGGCTGTTTCGACGCGATGTACTACAAGAGAAAAAA
TCCGAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGACGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(125-189)

Bacterial type II and III secretion system protein (Secretin)

(256-412)

Secretin and TonB N terminus short domain (STN)

(51-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

54.773

100

0.572
  comQ Acinetobacter baylyi ADP1

41.871

100

0.447
  pilQ Acinetobacter baumannii strain A118

41.048

100

0.447
  pilQ Acinetobacter baumannii D1279779

41.048

100

0.447
  pilQ Legionella pneumophila strain ERS1305867

43.062

99.287

0.428
  pilQ Legionella pneumophila strain Lp02

42.584

99.287

0.423
  pilQ Vibrio campbellii strain DS40M4

39.906

100

0.404
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.625

98.812

0.401
  pilQ Vibrio cholerae strain A1552

40.625

98.812

0.401