Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SCSC_RS03985 Genome accession   NZ_AP014647
Coordinates   804252..804956 (+) Length   234 a.a.
NCBI ID   WP_006269533.1    Uniprot ID   A0AAD2Y554
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 799252..809956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS03960 (SCSC_0820) - 799611..800816 (+) 1206 WP_171004446.1 multidrug efflux MFS transporter -
  SCSC_RS03965 (SCSC_0821) rpmG 800800..800949 (+) 150 WP_003024746.1 50S ribosomal protein L33 -
  SCSC_RS03970 (SCSC_0822) secG 800989..801222 (+) 234 WP_003024744.1 preprotein translocase subunit SecG -
  SCSC_RS03975 (SCSC_0823) rnr 801315..803654 (+) 2340 WP_006269566.1 ribonuclease R -
  SCSC_RS03980 (SCSC_0824) smpB 803617..804084 (+) 468 WP_003034458.1 SsrA-binding protein SmpB -
  SCSC_RS03985 (SCSC_0826) comEA/celA/cilE 804252..804956 (+) 705 WP_006269533.1 helix-hairpin-helix domain-containing protein Machinery gene
  SCSC_RS03990 (SCSC_0827) comEC/celB 804940..807168 (+) 2229 WP_037565577.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SCSC_RS03995 (SCSC_0828) - 807248..807736 (+) 489 WP_006269494.1 DUF805 domain-containing protein -
  SCSC_RS04000 (SCSC_0829) - 807758..807967 (+) 210 WP_022524619.1 hypothetical protein -
  SCSC_RS04005 (SCSC_0830) - 808412..809398 (+) 987 WP_006269544.1 Gfo/Idh/MocA family oxidoreductase -

Sequence


Protein


Download         Length: 234 a.a.        Molecular weight: 25346.67 Da        Isoelectric Point: 8.2610

>NTDB_id=66561 SCSC_RS03985 WP_006269533.1 804252..804956(+) (comEA/celA/cilE) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MLEVIITKIKEYKILVGLSLIGLIIAGFFLMTSKSARQSNVGDIAQEATNAKLERKETSTETKKKQQKEETESQKNLASE
ELEFLTVDVKGAVKNPGIYQLKKTSRINDAIQKAGGLTTDADSKSINLAQKLTDEAVIYVATMGENVTNAASNNGQTLTT
DTDGTAAQKGNKVNLNKANLSDLQSISGIGQKRAQDILDYREANGKFNSVDDLKNISGVGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=66561 SCSC_RS03985 WP_006269533.1 804252..804956(+) (comEA/celA/cilE) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGTTAGAGGTAATCATCACAAAAATAAAAGAGTATAAAATTTTAGTTGGTTTAAGCCTGATTGGTTTGATCATAGCAGG
ATTTTTTCTGATGACTAGTAAATCTGCTAGACAATCTAATGTGGGAGATATTGCACAAGAGGCCACAAATGCAAAACTAG
AACGGAAAGAAACTTCAACTGAAACGAAGAAAAAACAACAGAAAGAAGAAACAGAATCTCAAAAGAATTTAGCGAGTGAA
GAATTGGAATTTTTAACTGTAGATGTTAAAGGTGCTGTTAAAAATCCAGGTATTTATCAATTAAAAAAAACAAGCCGAAT
AAATGATGCTATCCAAAAAGCGGGTGGACTAACGACAGACGCTGACAGCAAATCTATCAATTTGGCTCAAAAACTAACAG
ATGAGGCTGTGATTTATGTGGCAACTATGGGTGAAAATGTAACAAATGCTGCAAGTAATAATGGACAAACTTTAACGACA
GATACCGATGGAACTGCGGCACAAAAAGGGAATAAGGTCAATCTAAATAAGGCTAATTTGTCTGATTTACAGTCTATTTC
TGGTATTGGACAAAAGCGCGCCCAAGATATTTTAGATTATCGTGAGGCAAATGGAAAATTTAATTCTGTTGATGATCTTA
AAAATATATCAGGAGTTGGTGCTAAAACATTAGAGAAATTGAAAGAATATGTCACAGTGGATTAA

Domains


Predicted by InterproScan.

(87-140)

(169-232)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.502

99.573

0.513

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

51.073

99.573

0.509

  comEA/celA/cilE Streptococcus mitis SK321

51.073

99.573

0.509

  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.644

99.573

0.504

  comEA/celA/cilE Streptococcus pneumoniae D39

50.644

99.573

0.504

  comEA/celA/cilE Streptococcus pneumoniae R6

50.644

99.573

0.504

  comEA Streptococcus thermophilus LMD-9

41.702

100

0.419

  comEA Lactococcus lactis subsp. cremoris KW2

36.91

99.573

0.368


Multiple sequence alignment