Detailed information NTG0665452

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: MQG38_RS00360
• Genome accession: NZ_CP093913
• Coordinates: 58644..60053 (-)
• Length: 469 a.a.
• NCBI ID: WP_005547542.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain 9R
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 53644..65053

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MQG38_RS00330	-	53825..55198 (-)	1374	WP_005547554.1	sodium:alanine symporter family protein	-
MQG38_RS00335	-	55595..55867 (-)	273	WP_005547552.1	GNAT family N-acetyltransferase	-
MQG38_RS00340	yacG	55867..56079 (-)	213	WP_005547550.1	DNA gyrase inhibitor YacG	-
MQG38_RS00345	coaE	56069..56692 (-)	624	WP_005547548.1	dephospho-CoA kinase	-
MQG38_RS00350	-	56742..57431 (-)	690	WP_005547547.1	A24 family peptidase	-
MQG38_RS00355	pilC	57428..58651 (-)	1224	WP_005547544.1	type II secretion system F family protein	Machinery gene
MQG38_RS00360	pilB	58644..60053 (-)	1410	WP_005547542.1	GspE/PulE family protein	Machinery gene
MQG38_RS00365	pilA	60080..60532 (-)	453	WP_005586498.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
MQG38_RS00370	ampD	60654..61208 (+)	555	WP_005567973.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
MQG38_RS00375	nanQ	61682..62152 (-)	471	WP_005547536.1	N-acetylneuraminate anomerase	-
MQG38_RS00380	pnp	62446..64575 (+)	2130	WP_258248086.1	polyribonucleotide nucleotidyltransferase	-

Sequence

Protein

• Length: 469 a.a.
• Molecular weight: 52496.80 Da
• Isoelectric Point: 6.1345

>NTDB_id=665452 MQG38_RS00360 WP_005547542.1 58644..60053(-) (pilB) [Aggregatibacter actinomycetemcomitans strain 9R]
MQNPMAQGYLIHSQNHGDFTIAPELWLKNQQQQTVLLRYLALPLAENGQTLWLGLDSLTNLSACEAFSFLTGKTIEPVLI
ESQTLKTALQDLSPRVEKVEENQPLFYSALSQEQPTQPYDEPIIRLLNDIFESATAQKASDIHLEPQADCLQTRFRIDGV
LQVQNTVPLSIASRLISRLKLLAKLDISETRLPQDGRFQFKTTFSDTLDFRLSTLATQFGEKAVLRLQQNRPVQLAFGEL
GMTESQQQRFRRALSQPQGLILVTGPTGSGKSISLYTALQYLNTSEKHIMTAEDPIEIQLPGIIQSQVNHPIGLDFSRLL
RTFLRQDPDIIMLGEIRDEESAAMALRAAQTGHLVLSTLHTNDAPSAISRLQQLGIQCHEIDGSLLLVIAQRLVRKRCQK
CGGNATRFCDCHQGYKGRVGVYQFLQPNLQHPQGYETDFADLGQSALEKLKDGTTDLTEIQRVLGQTHD

Nucleotide

• Length: 1410 bp

>NTDB_id=665452 MQG38_RS00360 WP_005547542.1 58644..60053(-) (pilB) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGCAAAATCCGATGGCGCAAGGTTATTTGATTCACAGCCAAAATCACGGGGACTTTACCATTGCGCCCGAGCTATGGCT
TAAAAATCAGCAACAACAAACCGTCCTGTTGCGTTATCTCGCCCTGCCCTTAGCAGAAAACGGGCAGACCTTGTGGCTAG
GGTTAGACTCGTTAACTAACCTGAGCGCCTGTGAAGCCTTTTCTTTTCTCACCGGCAAAACCATTGAGCCGGTATTAATT
GAAAGCCAAACGCTAAAAACCGCATTGCAGGATTTATCCCCGCGCGTCGAAAAAGTCGAAGAAAATCAACCGCTCTTTTA
TTCCGCACTGTCACAGGAACAGCCGACACAACCGTATGACGAACCGATTATTCGGCTGTTAAATGATATTTTTGAAAGCG
CGACGGCACAAAAAGCCTCCGATATTCATCTGGAACCGCAAGCAGACTGCCTGCAAACCCGTTTTCGCATTGACGGCGTG
CTGCAGGTGCAAAACACCGTTCCCTTATCCATAGCGAGCCGACTGATTTCTCGTTTAAAATTATTGGCAAAACTGGATAT
TAGCGAAACCCGCCTGCCGCAAGACGGACGCTTTCAGTTTAAAACGACGTTTTCCGACACGCTGGATTTTCGCCTTTCCA
CCCTTGCCACCCAATTCGGTGAAAAAGCGGTCCTGCGTTTGCAACAAAATCGTCCCGTGCAACTGGCATTCGGTGAACTG
GGCATGACGGAATCACAGCAACAGCGTTTTCGTCGTGCCTTGAGCCAACCACAAGGCTTGATTTTAGTCACCGGTCCGAC
AGGCAGCGGCAAAAGTATTTCTTTATATACGGCGTTGCAGTACTTAAATACGTCTGAAAAACACATTATGACGGCGGAAG
ATCCCATTGAAATTCAGCTCCCAGGCATTATTCAAAGCCAAGTGAATCACCCTATCGGCTTGGATTTCAGCCGATTGCTT
CGCACCTTTTTACGTCAAGATCCGGACATTATTATGTTAGGTGAAATTCGTGATGAAGAAAGTGCCGCCATGGCATTACG
CGCCGCGCAAACGGGGCATTTGGTGCTTTCGACGCTACATACCAACGACGCCCCTTCCGCCATTTCCCGCCTGCAACAAC
TCGGCATTCAATGCCATGAAATCGACGGCAGTTTGTTGCTGGTGATCGCCCAACGTTTGGTGCGCAAACGCTGCCAAAAG
TGCGGTGGAAATGCCACGCGTTTTTGCGATTGCCATCAAGGCTACAAAGGGCGTGTCGGGGTCTATCAATTCCTGCAACC
GAATTTACAACATCCGCAGGGCTATGAAACGGATTTCGCCGATTTAGGCCAAAGCGCTTTAGAAAAACTCAAAGACGGCA
CAACAGATTTAACCGAAATCCAACGGGTGTTAGGACAAACTCATGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (130-396)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (31-93)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Haemophilus influenzae Rd KW20	69.427	100	0.697
pilB	Haemophilus influenzae 86-028NP	70.87	98.081	0.695
pilB	Glaesserella parasuis strain SC1401	57.328	98.934	0.567
pilB	Vibrio cholerae strain A1552	40.53	100	0.424
pilB	Acinetobacter baylyi ADP1	39.078	100	0.416
pilB	Legionella pneumophila strain ERS1305867	39.468	100	0.412
pilB	Vibrio parahaemolyticus RIMD 2210633	40.041	100	0.412
pilB	Vibrio campbellii strain DS40M4	39.752	100	0.409
pilB	Acinetobacter baumannii D1279779	38.855	100	0.405
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.331	100	0.401
pilF	Neisseria gonorrhoeae MS11	36	100	0.365