Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MQG38_RS00365 Genome accession   NZ_CP093913
Coordinates   60080..60532 (-) Length   150 a.a.
NCBI ID   WP_005586498.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 9R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 55080..65532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG38_RS00335 - 55595..55867 (-) 273 WP_005547552.1 GNAT family N-acetyltransferase -
  MQG38_RS00340 yacG 55867..56079 (-) 213 WP_005547550.1 DNA gyrase inhibitor YacG -
  MQG38_RS00345 coaE 56069..56692 (-) 624 WP_005547548.1 dephospho-CoA kinase -
  MQG38_RS00350 - 56742..57431 (-) 690 WP_005547547.1 A24 family peptidase -
  MQG38_RS00355 pilC 57428..58651 (-) 1224 WP_005547544.1 type II secretion system F family protein Machinery gene
  MQG38_RS00360 pilB 58644..60053 (-) 1410 WP_005547542.1 GspE/PulE family protein Machinery gene
  MQG38_RS00365 pilA 60080..60532 (-) 453 WP_005586498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MQG38_RS00370 ampD 60654..61208 (+) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MQG38_RS00375 nanQ 61682..62152 (-) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  MQG38_RS00380 pnp 62446..64575 (+) 2130 WP_258248086.1 polyribonucleotide nucleotidyltransferase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15547.96 Da        Isoelectric Point: 9.1384

>NTDB_id=665453 MQG38_RS00365 WP_005586498.1 60080..60532(-) (pilA) [Aggregatibacter actinomycetemcomitans strain 9R]
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAASGVSWNAACGNNADIFPAGFCS

Nucleotide


Download         Length: 453 bp        

>NTDB_id=665453 MQG38_RS00365 WP_005586498.1 60080..60532(-) (pilA) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCAGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCAGCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGACATTTTCCCGGCAGGTTTCTGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

62.319

92

0.573
  pilA Haemophilus influenzae Rd KW20

59.028

96

0.567
  pilA Glaesserella parasuis strain SC1401

53.846

95.333

0.513