Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MQG38_RS00355 Genome accession   NZ_CP093913
Coordinates   57428..58651 (-) Length   407 a.a.
NCBI ID   WP_005547544.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 9R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52428..63651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG38_RS00320 - 52570..53124 (-) 555 WP_005547559.1 DUF5358 domain-containing protein -
  MQG38_RS00325 raiA 53273..53596 (-) 324 WP_005540708.1 ribosome-associated translation inhibitor RaiA -
  MQG38_RS00330 - 53825..55198 (-) 1374 WP_005547554.1 sodium:alanine symporter family protein -
  MQG38_RS00335 - 55595..55867 (-) 273 WP_005547552.1 GNAT family N-acetyltransferase -
  MQG38_RS00340 yacG 55867..56079 (-) 213 WP_005547550.1 DNA gyrase inhibitor YacG -
  MQG38_RS00345 coaE 56069..56692 (-) 624 WP_005547548.1 dephospho-CoA kinase -
  MQG38_RS00350 - 56742..57431 (-) 690 WP_005547547.1 A24 family peptidase -
  MQG38_RS00355 pilC 57428..58651 (-) 1224 WP_005547544.1 type II secretion system F family protein Machinery gene
  MQG38_RS00360 pilB 58644..60053 (-) 1410 WP_005547542.1 GspE/PulE family protein Machinery gene
  MQG38_RS00365 pilA 60080..60532 (-) 453 WP_005586498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MQG38_RS00370 ampD 60654..61208 (+) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MQG38_RS00375 nanQ 61682..62152 (-) 471 WP_005547536.1 N-acetylneuraminate anomerase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 46032.52 Da        Isoelectric Point: 10.0745

>NTDB_id=665451 MQG38_RS00355 WP_005547544.1 57428..58651(-) (pilC) [Aggregatibacter actinomycetemcomitans strain 9R]
MIKLKLFQWRAVNRLQQKQKDLIVAETEAMAQQQLLSCGLQNIKLQQNWQFSHKPKNADICTLLSQLATLLQAAVPLKNS
LQILLQNCTNIALNRWLRCLLQEIESGLAFSQALEQQGLYLTYQERQLIQVGEMTGKLAAVCHEIAQHKQQALALQRKIQ
KILLYPLLVLGISLILTALLLLFIVPQFAAMYDNSNAQLPVFTQVLLALSQGLQGYWFALLMFIALTVALIRFRLKHSPW
LNRQKNRLINSIPLLNRIVQLSRLVGFSHSLFLMLQAGIPLNQALQSFLPKQQSWQTKPQQQGDWLLIAGVQSALHWIQQ
GYPFSASVSGQIFPPAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDHQIDLLSQMLEPLLMVIIGGLIGLIMLGMYLPIF
NMGSLVQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=665451 MQG38_RS00355 WP_005547544.1 57428..58651(-) (pilC) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGATTAAATTGAAACTGTTTCAATGGCGCGCCGTTAATCGACTACAGCAAAAACAAAAAGACTTAATCGTGGCGGAAAC
GGAGGCGATGGCACAACAACAGCTGCTTTCATGCGGGTTGCAAAACATCAAATTACAACAAAACTGGCAATTTAGCCACA
AACCGAAAAATGCCGACATCTGCACGCTGCTTTCCCAACTGGCGACGCTGTTACAAGCCGCCGTGCCGCTGAAAAACAGC
CTGCAAATTTTATTGCAAAATTGTACCAATATTGCGTTGAATCGCTGGCTACGCTGCTTGCTACAGGAGATTGAAAGCGG
CTTAGCATTTTCTCAAGCATTGGAACAACAAGGTTTATACTTAACCTATCAGGAACGCCAACTGATTCAGGTGGGTGAAA
TGACAGGCAAACTTGCCGCCGTTTGTCATGAAATCGCACAACATAAACAACAGGCGCTGGCGTTGCAGCGTAAAATTCAG
AAAATCCTGCTTTATCCGTTGCTGGTGCTCGGAATCTCATTGATTTTGACCGCACTTTTATTGCTGTTCATCGTGCCGCA
ATTTGCCGCCATGTATGACAACAGCAACGCGCAACTGCCCGTGTTCACGCAGGTTTTACTAGCCCTTTCCCAAGGCTTGC
AGGGTTATTGGTTCGCGCTGCTCATGTTTATTGCGCTGACCGTGGCGTTAATTCGCTTTCGCCTCAAACATTCGCCTTGG
CTTAACCGACAAAAAAACCGGCTGATTAACAGTATTCCGCTACTTAATCGTATCGTACAACTCTCCCGTTTAGTGGGATT
CAGTCACAGCTTGTTTTTGATGTTACAGGCAGGTATTCCGCTGAATCAGGCGCTACAATCTTTCCTACCGAAACAACAAA
GCTGGCAAACTAAACCGCAGCAGCAAGGGGATTGGCTGCTTATTGCGGGAGTGCAATCGGCACTGCATTGGATTCAACAA
GGCTATCCGTTCTCCGCCAGCGTAAGCGGACAAATCTTCCCGCCGGCGGCACAACAAATGCTGCAAGTCGGCGAACAAAG
CGGTCAATTGCCGAAAATGCTGCAATTTATCGCCAACGATCATCAGCAACAATTGGATCACCAAATCGATCTACTGTCAC
AAATGCTGGAACCGTTGTTGATGGTAATTATCGGCGGGCTGATCGGCTTGATTATGCTCGGTATGTATTTACCGATTTTC
AACATGGGCTCGCTGGTACAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

63.027

99.017

0.624
  pilC Haemophilus influenzae 86-028NP

62.283

99.017

0.617
  pilC Glaesserella parasuis strain SC1401

39.152

98.526

0.386