Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG538_RS24440 Genome accession   NZ_CP108687
Coordinates   5624245..5624928 (+) Length   227 a.a.
NCBI ID   WP_406096962.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01013     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5619245..5629928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG538_RS24410 (OG538_24385) - 5619507..5620658 (-) 1152 WP_406096958.1 acyltransferase family protein -
  OG538_RS24415 (OG538_24390) - 5621150..5621344 (+) 195 WP_123471025.1 hypothetical protein -
  OG538_RS24430 (OG538_24405) tig 5621907..5623292 (+) 1386 WP_406096960.1 trigger factor -
  OG538_RS24435 (OG538_24410) - 5623559..5624164 (+) 606 WP_352121848.1 ATP-dependent Clp protease proteolytic subunit -
  OG538_RS24440 (OG538_24415) clpP 5624245..5624928 (+) 684 WP_406096962.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG538_RS24445 (OG538_24420) clpX 5625086..5626384 (+) 1299 WP_406096964.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG538_RS24450 (OG538_24425) - 5626459..5627457 (-) 999 WP_406100283.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24684.06 Da        Isoelectric Point: 4.6747

>NTDB_id=665307 OG538_RS24440 WP_406096962.1 5624245..5624928(+) (clpP) [Streptomyces sp. NBC_01013]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRLALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRAQLEELLAKHSTTPIEKIRDDIERDKILTADDALAYGLVDQIVATRKSAAAAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=665307 OG538_RS24440 WP_406096962.1 5624245..5624928(+) (clpP) [Streptomyces sp. NBC_01013]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCGTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGTGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCGGGCACGC
CGGGCAAGCGCCTGGCACTGCCTAACGCGCGCGTCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGTGCTCAGCTGGAGGAGCTGCTGGCCAAGCACTCCACCACGCC
GATCGAGAAGATCCGTGACGACATCGAGCGCGACAAGATCCTGACCGCCGATGACGCCCTGGCCTACGGTCTGGTCGACC
AGATCGTTGCCACCCGTAAGAGCGCGGCCGCAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.265

83.26

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.619

83.26

0.396
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus pneumoniae Rx1

44.792

84.581

0.379
  clpP Streptococcus pneumoniae TIGR4

44.792

84.581

0.379
  clpP Streptococcus pneumoniae R6

44.792

84.581

0.379
  clpP Streptococcus pneumoniae D39

44.792

84.581

0.379
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Streptococcus pyogenes JRS4

45.263

83.7

0.379
  clpP Streptococcus pyogenes MGAS315

45.263

83.7

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37