Detailed information NTG0665308

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG538_RS24445
• Genome accession: NZ_CP108687
• Coordinates: 5625086..5626384 (+)
• Length: 432 a.a.
• NCBI ID: WP_406096964.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01013
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5620086..5631384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG538_RS24415 (OG538_24390)	-	5621150..5621344 (+)	195	WP_123471025.1	hypothetical protein	-
OG538_RS24430 (OG538_24405)	tig	5621907..5623292 (+)	1386	WP_406096960.1	trigger factor	-
OG538_RS24435 (OG538_24410)	-	5623559..5624164 (+)	606	WP_352121848.1	ATP-dependent Clp protease proteolytic subunit	-
OG538_RS24440 (OG538_24415)	clpP	5624245..5624928 (+)	684	WP_406096962.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG538_RS24445 (OG538_24420)	clpX	5625086..5626384 (+)	1299	WP_406096964.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG538_RS24450 (OG538_24425)	-	5626459..5627457 (-)	999	WP_406100283.1	hypothetical protein	-
OG538_RS24455 (OG538_24430)	-	5627598..5630219 (+)	2622	WP_406096966.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 432 a.a.
• Molecular weight: 47349.18 Da
• Isoelectric Point: 4.7866

>NTDB_id=665308 OG538_RS24445 WP_406096964.1 5625086..5626384(+) (clpX) [Streptomyces sp. NBC_01013]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGSSRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELEFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
ADVVRNNVNPTLVPREPRTIGKGDEGRHEKSA

Nucleotide

• Length: 1299 bp

>NTDB_id=665308 OG538_RS24445 WP_406096964.1 5625086..5626384(+) (clpX) [Streptomyces sp. NBC_01013]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAACCGCGCGAGATCTACGAGTTCCTCGAGGGTTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCTGTGTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGGTTCGAGCCG
CGACGACGCGATCGAACTCGCCAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCGGGCAAGACGCTGCTCGCGCAGA
CACTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGATGTCTCCGGCGAGGGCGTGCAGCAGGCGC
TGCTGAAGATCCTGGAGGGCACCACTGCCTCCGTGCCGCCGCAGGGCGGTCGGAAGCACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCTCCGGGCTGGAGAAGATCATCGAGTCCCGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCCACGATCCGCTCCAAGCTGGAGATCCAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCGGTCCTGACCTCGGTCCACAACCTGGACCGC
GAAGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGGCTGTTCGAACTCGACGGTGT
GGAGCTGGAGTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCCAGACCGGCGCGCGAGGCCTGC
GCGCCATCATGGAGGAGGTCCTCCAGTCGGTGATGTACGAGGTGCCGTCCCGCAAGGACGTCGCCCGGGTCGTCATCACC
GCGGACGTGGTCCGCAACAACGTCAACCCGACCCTGGTCCCGCGCGAGCCGCGGACGATCGGCAAGGGCGACGAGGGGCG
GCACGAGAAGTCGGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	64.428	93.056	0.6
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.126	95.37	0.516