Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MOV92_RS18850 Genome accession   NZ_CP093547
Coordinates   4555594..4556856 (+) Length   420 a.a.
NCBI ID   WP_057944103.1    Uniprot ID   -
Organism   Lysobacter gummosus strain 10.1.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4550594..4561856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOV92_RS18830 (MOV92_18830) - 4551289..4552083 (-) 795 WP_148649007.1 hypothetical protein -
  MOV92_RS18835 (MOV92_18835) - 4552139..4552768 (-) 630 WP_057944101.1 class I SAM-dependent methyltransferase -
  MOV92_RS18840 (MOV92_18840) - 4552831..4553724 (-) 894 WP_057944102.1 glycosyltransferase family 2 protein -
  MOV92_RS18845 (MOV92_18845) pilB 4553859..4555589 (+) 1731 WP_083512649.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MOV92_RS18850 (MOV92_18850) pilC 4555594..4556856 (+) 1263 WP_057944103.1 type II secretion system F family protein Machinery gene
  MOV92_RS18855 (MOV92_18855) - 4556878..4557765 (+) 888 WP_057944104.1 A24 family peptidase -
  MOV92_RS18860 (MOV92_18860) coaE 4557768..4558388 (+) 621 WP_057944105.1 dephospho-CoA kinase -
  MOV92_RS18865 (MOV92_18865) - 4558627..4559592 (-) 966 WP_057945583.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45597.92 Da        Isoelectric Point: 10.3227

>NTDB_id=665200 MOV92_RS18850 WP_057944103.1 4555594..4556856(+) (pilC) [Lysobacter gummosus strain 10.1.1]
MSATRTATKQATQTAVRRANPLDMFVWQGTDKRGIKMKGEQAAKNANLLRAELRRQGITPTVVKPKGKPLFGASGSRITP
GEIAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNSVRADLESGSSLHEAMSKHPVQFDELYRNLVKAGESAGV
LETVLDTVANYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMISWW
WAVLLVVIGAAVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVY
EKAVLRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGV
IVGGMVVAMYLPIFKLAATI

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=665200 MOV92_RS18850 WP_057944103.1 4555594..4556856(+) (pilC) [Lysobacter gummosus strain 10.1.1]
ATGTCCGCGACCCGAACCGCCACCAAGCAAGCCACACAGACCGCAGTACGCCGGGCCAACCCGCTCGACATGTTCGTCTG
GCAGGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGGCGGCCAAGAACGCCAACCTGCTGCGCGCCGAACTGC
GCCGGCAAGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGCGCCTCCGGCAGCCGCATCACCCCG
GGCGAAATCGCGATCTTCAGCCGCCAGATCGCCACCATGATGAAGTCGGGCGTGCCGATCGTGACCTCGCTGGAAATCAT
CGGCGAGGGCCACAAGAACCCGCGCATGAAGAAGCTGCTGAACTCGGTGCGCGCCGACCTGGAAAGCGGCTCGTCGCTGC
ACGAGGCCATGAGCAAGCATCCGGTCCAGTTCGATGAGCTTTACCGCAACCTGGTCAAGGCCGGCGAATCGGCGGGCGTG
CTCGAAACCGTGCTCGACACGGTCGCCAACTACAAAGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGCCTTGTT
CTACCCCGCCACCGTGGTCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCCAGGCCA
CGTTCAAGAGCTTCGGCGCCGACTTGCCGGCCTTCACGCTCATGGTCATCGGCATGAGCGATTTCATGATTTCATGGTGG
TGGGCGGTATTGCTGGTGGTGATTGGCGCCGCCGTGGCCTTCATCATGGCCAAGAACCGCTCCCCCGCCTTCGCCCACTT
CCTCGACCGGGCCATGCTCAAGATCCCGGTCGTCGGCCAGATCCTGCACAACGCCGCGATCGCCCGCTTCGCCCGCACCC
TGGCGGTGACCTTCCGCGCCGGCGTGCCGCTGGTCGAGGCACTGGACACCGTGGCCGGCGCGACCGGCAACGTGGTCTAC
GAAAAGGCGGTCCTGCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTT
CCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCACTCGACACCATGCTGGTCAAGGTCGCGGAGT
TCTACGAGCAGGAAGTCAACAACGCCGTGGATGCGCTGTCGAGCCTGCTGGAACCGCTGATCATGATCATCCTCGGCGTG
ATCGTCGGCGGCATGGTCGTCGCCATGTATCTGCCGATCTTCAAACTGGCTGCGACGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(86-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.446

96.19

0.533
  pilC Pseudomonas stutzeri DSM 10701

55.808

94.286

0.526
  pilC Acinetobacter baylyi ADP1

51.961

97.143

0.505
  pilC Acinetobacter baumannii D1279779

51.597

96.905

0.5
  pilG Neisseria gonorrhoeae MS11

43.5

95.238

0.414
  pilG Neisseria meningitidis 44/76-A

43.5

95.238

0.414
  pilC Vibrio campbellii strain DS40M4

41.045

95.714

0.393
  pilC Vibrio cholerae strain A1552

39.659

97.857

0.388
  pilC Thermus thermophilus HB27

36.493

100

0.367