Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG331_RS32655 Genome accession   NZ_CP108683
Coordinates   7087513..7088193 (+) Length   226 a.a.
NCBI ID   WP_406202814.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01017     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7082513..7093193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG331_RS32625 (OG331_32435) - 7082935..7083129 (+) 195 WP_030044846.1 hypothetical protein -
  OG331_RS32630 (OG331_32440) - 7083231..7083736 (+) 506 Protein_6458 protein kinase domain-containing protein -
  OG331_RS32645 (OG331_32455) tig 7085150..7086544 (+) 1395 WP_406202812.1 trigger factor -
  OG331_RS32650 (OG331_32460) clpP 7086822..7087442 (+) 621 WP_328881648.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG331_RS32655 (OG331_32465) clpP 7087513..7088193 (+) 681 WP_406202814.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG331_RS32660 (OG331_32470) clpX 7088374..7089660 (+) 1287 WP_406202816.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG331_RS32665 (OG331_32475) - 7089738..7090721 (-) 984 WP_406202818.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25044.41 Da        Isoelectric Point: 4.5790

>NTDB_id=665151 OG331_RS32655 WP_406202814.1 7087513..7088193(+) (clpP) [Streptomyces sp. NBC_01017]
MNDFPGSGLYDRTRAEYTGPAAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTPIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNSADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=665151 OG331_RS32655 WP_406202814.1 7087513..7088193(+) (clpP) [Streptomyces sp. NBC_01017]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACGCGCGCCGAGTACACGGGTCCCGCCGCCGAGTCCCGCTACGT
CATCCCGCGGTTCGTGGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCGGGCGGCTCCTTCACCGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTTCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTGGCCGCCGGCACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCTGCGAACGAGATCCTTCGGATGCGCTCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATTCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGTACGGGCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAGCGCCGACGTTCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376