Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG316_RS16495 Genome accession   NZ_CP108674
Coordinates   3746736..3747419 (-) Length   227 a.a.
NCBI ID   WP_306070064.1    Uniprot ID   A0ABY9IUC2
Organism   Streptomyces sp. NBC_01022     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3741736..3752419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG316_RS16485 (OG316_16540) - 3744208..3745209 (+) 1002 WP_326736178.1 hypothetical protein -
  OG316_RS16490 (OG316_16545) clpX 3745280..3746578 (-) 1299 WP_326736179.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG316_RS16495 (OG316_16550) clpP 3746736..3747419 (-) 684 WP_306070064.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG316_RS16500 (OG316_16555) - 3747500..3748105 (-) 606 WP_168713553.1 ATP-dependent Clp protease proteolytic subunit -
  OG316_RS16505 (OG316_16560) tig 3748371..3749765 (-) 1395 WP_326736180.1 trigger factor -
  OG316_RS16520 (OG316_16575) - 3750345..3750539 (-) 195 WP_123471025.1 hypothetical protein -
  OG316_RS16525 (OG316_16580) - 3751032..3752183 (+) 1152 WP_326736181.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24697.05 Da        Isoelectric Point: 4.6747

>NTDB_id=664903 OG316_RS16495 WP_306070064.1 3746736..3747419(-) (clpP) [Streptomyces sp. NBC_01022]
MVNTHMNNFPGASANGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRLALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRAQLEELLAKHSTTPIEKIRDDIERDKILTADDALAYGLVDQIVATRKSAAGAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=664903 OG316_RS16495 WP_306070064.1 3746736..3747419(-) (clpP) [Streptomyces sp. NBC_01022]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCGTCCGCGAACGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGTGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGCACGC
CGGGCAAGCGCCTGGCGCTGCCGAACGCGCGCGTACTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGGGCCCAGCTGGAGGAGCTGCTGGCCAAGCACTCCACCACGCC
GATCGAGAAGATCCGTGACGACATCGAGCGGGACAAGATCCTGACCGCCGATGACGCCCTGGCCTATGGTCTGGTCGACC
AGATCGTCGCGACCCGTAAGAGCGCGGCCGGAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.265

83.26

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.619

83.26

0.396
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Streptococcus pyogenes JRS4

45.263

83.7

0.379
  clpP Streptococcus pyogenes MGAS315

45.263

83.7

0.379
  clpP Streptococcus pneumoniae Rx1

45.026

84.141

0.379
  clpP Streptococcus pneumoniae D39

45.026

84.141

0.379
  clpP Streptococcus pneumoniae R6

45.026

84.141

0.379
  clpP Streptococcus pneumoniae TIGR4

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37