Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MO330_RS15055 Genome accession   NZ_CP093446
Coordinates   3451372..3452631 (+) Length   419 a.a.
NCBI ID   WP_304532031.1    Uniprot ID   -
Organism   Xanthomonas translucens strain CIX303     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3446372..3457631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO330_RS15035 (MO330_15010) - 3447288..3447470 (+) 183 WP_003466380.1 YhfG family protein -
  MO330_RS15040 (MO330_15015) - 3447467..3447919 (+) 453 WP_230811680.1 Fic family protein -
  MO330_RS15045 (MO330_15020) pilB 3448094..3449830 (-) 1737 WP_304532030.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MO330_RS15050 (MO330_15025) - 3450578..3450988 (-) 411 WP_058362150.1 pilin -
  MO330_RS15055 (MO330_15030) pilC 3451372..3452631 (+) 1260 WP_304532031.1 type II secretion system F family protein Machinery gene
  MO330_RS15060 (MO330_15035) - 3452638..3453501 (+) 864 WP_003477103.1 A24 family peptidase -
  MO330_RS15065 (MO330_15040) coaE 3453515..3454135 (+) 621 WP_003477105.1 dephospho-CoA kinase -
  MO330_RS15070 (MO330_15045) - 3454228..3455595 (-) 1368 WP_304532032.1 HAMP domain-containing sensor histidine kinase -
  MO330_RS15075 (MO330_15050) - 3455588..3456265 (-) 678 WP_003466405.1 response regulator transcription factor -
  MO330_RS15080 (MO330_15055) - 3456364..3456579 (-) 216 WP_003466408.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45676.92 Da        Isoelectric Point: 10.1825

>NTDB_id=664723 MO330_RS15055 WP_304532031.1 3451372..3452631(+) (pilC) [Xanthomonas translucens strain CIX303]
MSATRSAVSKEPVARNISQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGNKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPWMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNMAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=664723 MO330_RS15055 WP_304532031.1 3451372..3452631(+) (pilC) [Xanthomonas translucens strain CIX303]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATATCAGCCAGCAGGTCCCGTTCGTCTGGGAGGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGTCGCC
AGGGCATCACGCCGTCGGTGGTCAAGCCGAAACCCAAACCCCTGTTCGGCGCTGCCGGCAACAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGACGAACTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTCCTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCTGTCATGGCGGTGGCGCTGCTGGTCAGCTCGATCCTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTGGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCTGGCGCCACCGGCAATAGCGTCTACGAGAAG
GCCGTGCTGCGCATGCGCGACGACGTTTCGGTAGGCTACCCGGTCAACATGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCATTGAGCAGCCTGATCGAGCCGCTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTGATCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Legionella pneumophila strain ERS1305867

51.238

96.42

0.494
  pilC Acinetobacter baylyi ADP1

51.365

96.181

0.494
  pilC Acinetobacter baumannii D1279779

50.868

96.181

0.489
  pilG Neisseria gonorrhoeae MS11

42.714

94.988

0.406
  pilC Vibrio cholerae strain A1552

41.728

96.659

0.403
  pilG Neisseria meningitidis 44/76-A

42.211

94.988

0.401
  pilC Vibrio campbellii strain DS40M4

39.547

94.749

0.375
  pilC Thermus thermophilus HB27

39

95.465

0.372