Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG596_RS25130 Genome accession   NZ_CP108654
Coordinates   5614119..5614802 (+) Length   227 a.a.
NCBI ID   WP_019992624.1    Uniprot ID   A0ABU2RG42
Organism   Streptomyces sp. NBC_01102     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5609119..5619802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS25100 (OG596_25040) - 5609208..5610416 (-) 1209 WP_405390843.1 acyltransferase family protein -
  OG596_RS25105 (OG596_25045) - 5610895..5611089 (+) 195 WP_405393228.1 hypothetical protein -
  OG596_RS25120 (OG596_25060) tig 5611741..5613150 (+) 1410 WP_405390844.1 trigger factor -
  OG596_RS25125 (OG596_25065) - 5613425..5614030 (+) 606 WP_164494208.1 ATP-dependent Clp protease proteolytic subunit -
  OG596_RS25130 (OG596_25070) clpP 5614119..5614802 (+) 684 WP_019992624.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG596_RS25135 (OG596_25075) clpX 5614959..5616260 (+) 1302 WP_056785577.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG596_RS25140 (OG596_25080) - 5616340..5617329 (-) 990 WP_405390845.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24794.15 Da        Isoelectric Point: 4.6800

>NTDB_id=664531 OG596_RS25130 WP_019992624.1 5614119..5614802(+) (clpP) [Streptomyces sp. NBC_01102]
MVNTHMNNFPGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTADDALAYGLVDQIVSTRKTTAGASV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=664531 OG596_RS25130 WP_019992624.1 5614119..5614802(+) (clpP) [Streptomyces sp. NBC_01102]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCGGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTCGAAGAGATGCTGGCCAAGCACTCGACCACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATCCTTACCGCCGACGACGCACTGGCGTACGGTCTGGTGGACC
AGATCGTGTCCACCCGCAAGACCACAGCCGGCGCGTCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

82.819

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

44.211

83.7

0.37
  clpP Streptococcus pyogenes MGAS315

43.299

85.463

0.37
  clpP Streptococcus pyogenes JRS4

43.299

85.463

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37
  clpP Streptococcus pneumoniae TIGR4

43.523

85.022

0.37
  clpP Streptococcus pneumoniae D39

43.523

85.022

0.37
  clpP Streptococcus pneumoniae Rx1

43.523

85.022

0.37
  clpP Streptococcus pneumoniae R6

43.523

85.022

0.37