Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MN187_RS00045 Genome accession   NZ_CP093384
Coordinates   10071..10574 (+) Length   167 a.a.
NCBI ID   WP_117973761.1    Uniprot ID   -
Organism   Vagococcus sp. CY52-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5071..15574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN187_RS00035 (MN187_00035) gyrA 6894..9407 (+) 2514 WP_242093935.1 DNA gyrase subunit A -
  MN187_RS00040 (MN187_00040) rpsF 9728..10027 (+) 300 WP_117973759.1 30S ribosomal protein S6 -
  MN187_RS00045 (MN187_00045) ssb 10071..10574 (+) 504 WP_117973761.1 single-stranded DNA-binding protein Machinery gene
  MN187_RS00050 (MN187_00050) rpsR 10593..10832 (+) 240 WP_071455937.1 30S ribosomal protein S18 -
  MN187_RS00055 (MN187_00055) rplI 10966..11418 (+) 453 WP_242093937.1 50S ribosomal protein L9 -
  MN187_RS00060 (MN187_00060) dnaB 11442..12809 (+) 1368 WP_117973765.1 replicative DNA helicase -
  MN187_RS00065 (MN187_00065) - 12932..14224 (+) 1293 WP_117973767.1 adenylosuccinate synthase -
  MN187_RS00070 (MN187_00070) - 14318..15190 (+) 873 WP_242093940.1 DegV family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18705.35 Da        Isoelectric Point: 4.6968

>NTDB_id=664204 MN187_RS00045 WP_117973761.1 10071..10574(+) (ssb) [Vagococcus sp. CY52-2]
MINNVVLVGRLTRDPDLRYTSNGSAVATFNLAVNRNFTNQSGEREADFINCVIWRKPAETLANYAKKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESKNASSQRQQQTSGFNNFSQDNQNTQSSFGQSSSNDMPNFDRDNSNPFGNSSSIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=664204 MN187_RS00045 WP_117973761.1 10071..10574(+) (ssb) [Vagococcus sp. CY52-2]
ATGATTAACAATGTTGTATTGGTAGGTAGACTTACTCGAGACCCAGATTTGAGATATACGTCAAATGGTTCTGCCGTAGC
GACTTTTAACTTAGCTGTTAATCGTAACTTTACAAATCAAAGTGGGGAACGAGAAGCAGACTTTATTAATTGTGTGATTT
GGAGAAAACCAGCTGAAACCTTAGCAAATTATGCTAAAAAAGGAACTCTATTGGGAGTAGTTGGACGTATTCAAACTAGA
AACTACGAGAATCAACAGGGACAAAGAGTGTATGTAACTGAAGTGGTTTGTGAGAACTTCCAATTATTAGAATCTAAGAA
TGCATCGAGTCAAAGACAACAGCAAACTAGCGGATTTAATAATTTTTCTCAAGATAACCAAAATACACAATCATCATTTG
GCCAATCTTCAAGTAATGACATGCCGAACTTCGATCGTGATAATAGTAATCCTTTTGGAAACTCATCATCGATAGATATT
TCGGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.353

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.6

74.85

0.371
  ssbB/cilA Streptococcus pneumoniae Rx1

48.8

74.85

0.365
  ssbB/cilA Streptococcus pneumoniae D39

48.8

74.85

0.365
  ssbB/cilA Streptococcus pneumoniae R6

48.8

74.85

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

48.8

74.85

0.365
  ssbB/cilA Streptococcus mitis SK321

48.8

74.85

0.365