Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AS4_RS20005 Genome accession   NZ_AP014630
Coordinates   4295366..4297540 (-) Length   724 a.a.
NCBI ID   WP_096735282.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4290366..4302540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS19990 (AS4_40350) - 4292788..4293654 (-) 867 WP_096735280.1 hypothetical protein -
  AS4_RS19995 (AS4_40360) aroB 4293671..4294750 (-) 1080 WP_096735281.1 3-dehydroquinate synthase -
  AS4_RS20000 (AS4_40370) aroK 4294787..4295329 (-) 543 WP_004725433.1 shikimate kinase AroK -
  AS4_RS20005 (AS4_40380) pilQ 4295366..4297540 (-) 2175 WP_096735282.1 type IV pilus secretin PilQ family protein Machinery gene
  AS4_RS20010 (AS4_40390) pilP 4297561..4298091 (-) 531 WP_096735283.1 pilus assembly protein PilP Machinery gene
  AS4_RS20015 (AS4_40400) comO 4298088..4298837 (-) 750 WP_096735284.1 type 4a pilus biogenesis protein PilO Machinery gene
  AS4_RS20020 (AS4_40410) pilN 4298834..4299475 (-) 642 WP_034615056.1 PilN domain-containing protein Machinery gene
  AS4_RS20025 (AS4_40420) comM 4299475..4300533 (-) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 78737.41 Da        Isoelectric Point: 8.8059

>NTDB_id=66380 AS4_RS20005 WP_096735282.1 4295366..4297540(-) (pilQ) [Acinetobacter guillouiae strain NBRC 110550]
MKKSLKNIFNGDGKFMNSQLRQFTMAAVSIAIMQVAAAQTTMTNIVPMKIPGQGTEIRVMFNGLPPQPQAYQLDNPSRLI
LDFDQAKQTINQSSIAVASEEASTVDIAADDQRSRLTVNLKNSGSFTTRVEGNTFILKINNANQAAALPTYAASASILNK
QNQGIADIGFQRGNAGEGQVIVNLSGANTPVDVQQQGSKVVIRTLGNKIPAHLIRRLNVNDFATPVSSVDAYNDGSNGVI
TIQSSGSYEYMAFQAENKLTVSLKRPVENKANRPNVSQSYTGKKISLDFQDIEVRRVLQLLADFTSINMVAADSVQGNIT
LRLKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKAIAQSVKLAPIQTEYIQLNYAKVAEVLKLLQDS
RNPKGAQTNNTNNTDSLALESLLSLRGSAVADTRTNTLIINDTANNIDKIRKMIDLLDISVKQVMVEARIVRATTDFTKE
MGVKWGILSQGITKNNDLLVGGSDQTLWDLKTPDSNGKYTITRPDNLNVDLGVTTAGASKIAFGLISMSDFMLDLELSAL
QADGYGEVISTPKVMTADKQKAKVASGQQIPYQSTQTAGGSAVATTEFKDALLSLDVTPSITPEGKVQMQLNVTSDSAGQ
IVNGNVAINKNEINTNVLVDDGETVVLGGIFEQETKNSQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSR
TRNH

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=66380 AS4_RS20005 WP_096735282.1 4295366..4297540(-) (pilQ) [Acinetobacter guillouiae strain NBRC 110550]
ATGAAAAAGAGTTTGAAAAATATCTTTAACGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGGC
AGTGTCAATTGCGATTATGCAGGTTGCAGCAGCGCAAACAACCATGACCAATATTGTACCGATGAAAATACCGGGGCAAG
GTACAGAAATTCGTGTGATGTTTAATGGCTTACCGCCACAGCCTCAAGCCTATCAATTGGATAATCCATCGCGACTGATT
TTGGATTTTGATCAGGCGAAGCAAACGATCAATCAGTCGTCTATTGCTGTGGCGAGTGAAGAAGCGTCGACTGTGGATAT
TGCGGCCGATGATCAACGTTCACGCTTAACAGTAAATTTAAAAAATAGTGGTTCTTTTACAACGCGTGTTGAAGGGAATA
CCTTTATTTTAAAGATTAACAATGCCAATCAAGCTGCTGCTTTACCGACTTATGCAGCATCTGCATCTATACTGAATAAG
CAAAATCAAGGCATCGCAGATATCGGTTTTCAGCGTGGCAATGCGGGTGAGGGGCAGGTTATTGTAAATCTGTCTGGTGC
AAATACACCTGTAGATGTGCAACAACAGGGCAGTAAAGTTGTTATTCGAACCTTAGGGAATAAAATTCCAGCACATTTAA
TTCGTCGTTTAAATGTCAATGATTTTGCGACCCCAGTTTCTTCTGTGGATGCTTATAATGATGGTTCCAATGGTGTAATC
ACCATTCAATCTTCGGGGAGCTATGAATATATGGCTTTCCAAGCGGAAAATAAATTGACCGTGAGTTTAAAGCGCCCTGT
AGAAAATAAAGCAAATCGTCCCAATGTGAGTCAATCTTATACGGGTAAGAAAATCTCACTGGATTTTCAAGATATTGAAG
TACGCCGTGTGCTACAGCTGCTTGCTGATTTTACCAGTATTAATATGGTGGCTGCGGATTCAGTTCAAGGTAATATCACT
TTACGTTTAAAAGATGTACCTTGGGATCAGGCCTTAGATATTATTTTAAAAACCAAAAATTTAGATAAGCGCCGTAATGG
GAGTGTGATTTGGATTGCGCCTGTCACCGAGCTGATTAAAGCAGAAGAAGATGAAGCCAAAGCAATAGCACAAAGTGTAA
AATTAGCACCAATTCAAACTGAATATATTCAGCTTAATTATGCAAAAGTTGCAGAAGTTCTTAAATTGTTACAGGACTCT
AGAAACCCTAAAGGTGCGCAGACAAATAATACCAATAATACAGATTCTTTAGCTTTAGAAAGTCTACTGAGCTTAAGAGG
AAGTGCGGTTGCAGATACAAGAACAAATACATTAATTATTAATGATACTGCAAATAATATTGATAAAATCCGTAAAATGA
TTGATCTATTGGATATTTCGGTAAAACAAGTCATGGTTGAAGCACGTATTGTTCGTGCTACGACAGATTTTACCAAAGAA
ATGGGGGTAAAGTGGGGCATTTTATCTCAAGGGATTACCAAGAATAATGATTTGCTGGTTGGTGGAAGTGATCAAACACT
TTGGGATTTAAAAACCCCAGATAGTAATGGCAAATATACCATTACTCGCCCTGATAATTTAAATGTCGATCTTGGTGTGA
CGACTGCGGGTGCAAGTAAGATTGCATTTGGTTTAATTAGTATGTCTGATTTTATGTTAGACCTAGAATTATCTGCATTA
CAAGCTGATGGTTATGGGGAAGTGATTTCAACACCAAAAGTAATGACTGCCGATAAACAAAAAGCCAAAGTTGCTTCGGG
TCAACAAATTCCATATCAGTCAACGCAAACTGCAGGAGGCAGTGCCGTTGCAACAACTGAATTTAAAGATGCTTTGCTCA
GTTTGGATGTTACACCAAGCATTACTCCAGAAGGGAAAGTACAAATGCAGCTAAATGTCACAAGTGACTCAGCTGGTCAA
ATAGTGAATGGAAATGTGGCGATTAACAAGAATGAAATCAATACCAATGTCTTAGTCGATGATGGAGAAACCGTGGTATT
AGGTGGCATTTTTGAACAAGAAACTAAAAACAGTCAGACCAAAGTTCCATTTTTAGGTGATATCCCGTATCTAGGACGAT
TATTTAGAAAGGATGTAAAGTCTGATAATAAACGAGAGTTACTAATCTTTGTGACACCAAGAATTGTTAATGACAGTCGT
ACCAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-137)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-463)

Secretin and TonB N terminus short domain (STN)

(312-354)

Bacterial type II and III secretion system protein (Secretin)

(559-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.665

100

0.731
  pilQ Acinetobacter baumannii strain A118

72.665

100

0.731
  comQ Acinetobacter baylyi ADP1

69.832

98.895

0.691
  pilQ Pseudomonas aeruginosa PAK

40.082

100

0.405

Multiple sequence alignment