Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AS4_RS20010 Genome accession   NZ_AP014630
Coordinates   4297561..4298091 (-) Length   176 a.a.
NCBI ID   WP_096735283.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4292561..4303091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS19990 (AS4_40350) - 4292788..4293654 (-) 867 WP_096735280.1 hypothetical protein -
  AS4_RS19995 (AS4_40360) aroB 4293671..4294750 (-) 1080 WP_096735281.1 3-dehydroquinate synthase -
  AS4_RS20000 (AS4_40370) aroK 4294787..4295329 (-) 543 WP_004725433.1 shikimate kinase AroK -
  AS4_RS20005 (AS4_40380) pilQ 4295366..4297540 (-) 2175 WP_096735282.1 type IV pilus secretin PilQ family protein Machinery gene
  AS4_RS20010 (AS4_40390) pilP 4297561..4298091 (-) 531 WP_096735283.1 pilus assembly protein PilP Machinery gene
  AS4_RS20015 (AS4_40400) comO 4298088..4298837 (-) 750 WP_096735284.1 type 4a pilus biogenesis protein PilO Machinery gene
  AS4_RS20020 (AS4_40410) pilN 4298834..4299475 (-) 642 WP_034615056.1 PilN domain-containing protein Machinery gene
  AS4_RS20025 (AS4_40420) comM 4299475..4300533 (-) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19438.48 Da        Isoelectric Point: 5.2386

>NTDB_id=66381 AS4_RS20010 WP_096735283.1 4297561..4298091(-) (pilP) [Acinetobacter guillouiae strain NBRC 110550]
MNQLSKIVCGISFAMLLVGCDSRIDAVNQEMANIRNQQPLPIEPAPVFNPVPSFNYSAQQLRSPFLPSSLANELKIMSGK
RVYPNFSRQPQPLESYPLESLTLKGSMKGAVGQTVGLIQTPDGEIERVQLGNYMGMNQGRIIEITPTRIDLLEIVPDGRD
GYIERPRSLVLIGPID

Nucleotide


Download         Length: 531 bp        

>NTDB_id=66381 AS4_RS20010 WP_096735283.1 4297561..4298091(-) (pilP) [Acinetobacter guillouiae strain NBRC 110550]
ATGAACCAGCTCAGTAAAATAGTTTGTGGAATCTCATTTGCAATGCTGTTGGTGGGGTGCGATTCTCGTATTGATGCCGT
TAACCAAGAAATGGCAAATATTAGAAATCAGCAACCATTGCCGATTGAACCTGCACCAGTATTTAATCCTGTACCAAGCT
TTAATTATTCAGCTCAACAATTACGCAGCCCATTTTTGCCAAGCTCATTGGCAAATGAATTGAAAATCATGTCAGGCAAG
CGTGTCTACCCGAATTTTTCAAGACAACCACAGCCGCTTGAAAGCTATCCTTTAGAGTCGTTAACACTGAAAGGAAGTAT
GAAAGGAGCTGTTGGGCAAACAGTGGGGTTGATTCAAACACCTGATGGTGAGATTGAGCGGGTACAACTTGGCAACTACA
TGGGTATGAATCAAGGGCGAATTATTGAAATTACGCCGACCCGTATTGATTTATTGGAAATTGTTCCAGATGGTCGAGAC
GGTTATATAGAAAGACCACGGAGTCTAGTTCTAATCGGTCCAATAGATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

73.256

97.727

0.716
  comL Acinetobacter baylyi ADP1

79.114

89.773

0.71

Multiple sequence alignment