Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   AS4_RS20015 Genome accession   NZ_AP014630
Coordinates   4298088..4298837 (-) Length   249 a.a.
NCBI ID   WP_096735284.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4293088..4303837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS19995 (AS4_40360) aroB 4293671..4294750 (-) 1080 WP_096735281.1 3-dehydroquinate synthase -
  AS4_RS20000 (AS4_40370) aroK 4294787..4295329 (-) 543 WP_004725433.1 shikimate kinase AroK -
  AS4_RS20005 (AS4_40380) pilQ 4295366..4297540 (-) 2175 WP_096735282.1 type IV pilus secretin PilQ family protein Machinery gene
  AS4_RS20010 (AS4_40390) pilP 4297561..4298091 (-) 531 WP_096735283.1 pilus assembly protein PilP Machinery gene
  AS4_RS20015 (AS4_40400) comO 4298088..4298837 (-) 750 WP_096735284.1 type 4a pilus biogenesis protein PilO Machinery gene
  AS4_RS20020 (AS4_40410) pilN 4298834..4299475 (-) 642 WP_034615056.1 PilN domain-containing protein Machinery gene
  AS4_RS20025 (AS4_40420) comM 4299475..4300533 (-) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene
  AS4_RS20030 (AS4_40430) ponA 4300697..4303237 (+) 2541 WP_096735285.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28305.06 Da        Isoelectric Point: 5.1653

>NTDB_id=66382 AS4_RS20015 WP_096735284.1 4298088..4298837(-) (comO) [Acinetobacter guillouiae strain NBRC 110550]
MSREDFEQLESSVNDAPKKNKMTVEKFFQQFNTLDMNNYGSWPLSVKVTCWVFLFFLVCAIGYFLAIRPKLDAIDQARTV
EQNLLNEFKEKDSKLRNLQQYQAQLQQMEANFNQQLEQLPKETEIPSLVEDINVTGVSSGLKFKNIKLEPEVKQEFFIEQ
PISIDATGDYHSFGSFVSSLAALPRIVTLHDFTITGTPSQDNKSDVPVIDYTIKAKTYRYIGADEQKINKSANAVAQKTT
TPQQGGKPQ

Nucleotide


Download         Length: 750 bp        

>NTDB_id=66382 AS4_RS20015 WP_096735284.1 4298088..4298837(-) (comO) [Acinetobacter guillouiae strain NBRC 110550]
ATGAGCCGTGAAGATTTTGAGCAATTAGAATCATCTGTAAATGATGCTCCAAAAAAGAACAAGATGACTGTTGAGAAGTT
TTTTCAACAGTTCAATACCTTGGATATGAATAACTATGGCAGTTGGCCTTTATCCGTTAAAGTCACCTGTTGGGTATTCT
TGTTTTTTTTGGTGTGTGCAATTGGCTATTTTTTAGCAATTAGACCTAAATTAGATGCAATTGATCAAGCACGTACAGTT
GAACAAAACTTATTAAATGAGTTTAAAGAAAAAGACTCTAAATTAAGAAACTTGCAGCAATATCAAGCACAACTGCAACA
AATGGAAGCAAATTTTAATCAGCAATTAGAGCAACTTCCTAAAGAAACTGAAATTCCGAGTCTGGTTGAAGATATTAACG
TGACAGGGGTAAGTTCTGGTTTGAAATTTAAAAATATCAAATTAGAACCAGAAGTGAAGCAGGAGTTCTTTATTGAGCAG
CCGATCTCTATTGATGCAACAGGGGATTATCATTCATTTGGCAGTTTTGTAAGTAGTTTGGCTGCTTTACCACGTATTGT
CACTTTGCATGATTTCACAATTACAGGAACACCTAGTCAAGACAATAAATCTGATGTGCCAGTGATTGACTATACAATTA
AAGCAAAAACCTATCGTTATATCGGTGCTGATGAACAGAAGATAAATAAATCTGCGAATGCTGTAGCACAGAAAACAACG
ACACCTCAGCAAGGAGGGAAGCCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

72.414

93.173

0.675
  pilO Acinetobacter baumannii D1279779

68.571

98.394

0.675

Multiple sequence alignment