Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG414_RS11785 Genome accession   NZ_CP108605
Coordinates   2545439..2546122 (-) Length   227 a.a.
NCBI ID   WP_031091966.1    Uniprot ID   A0ABU8A1V4
Organism   Streptomyces sp. NBC_01174     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2540439..2551122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG414_RS11770 (OG414_11765) - 2542275..2543291 (+) 1017 WP_405629585.1 hypothetical protein -
  OG414_RS11775 (OG414_11770) - 2543504..2543776 (-) 273 WP_405629587.1 hypothetical protein -
  OG414_RS11780 (OG414_11775) clpX 2543984..2545282 (-) 1299 WP_099172566.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG414_RS11785 (OG414_11780) clpP 2545439..2546122 (-) 684 WP_031091966.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG414_RS11790 (OG414_11785) - 2546190..2546795 (-) 606 WP_099172994.1 ATP-dependent Clp protease proteolytic subunit -
  OG414_RS11795 (OG414_11790) tig 2547096..2548499 (-) 1404 WP_129262943.1 trigger factor -
  OG414_RS11810 (OG414_11805) - 2549066..2549413 (-) 348 WP_319353081.1 DUF1330 domain-containing protein -
  OG414_RS11815 (OG414_11810) - 2549533..2549727 (-) 195 WP_073746901.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24784.12 Da        Isoelectric Point: 4.6800

>NTDB_id=663786 OG414_RS11785 WP_031091966.1 2545439..2546122(-) (clpP) [Streptomyces sp. NBC_01174]
MVNTHMNNFSGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTADDALAYGLVDQIVSTRKTTAGASV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=663786 OG414_RS11785 WP_031091966.1 2545439..2546122(-) (clpP) [Streptomyces sp. NBC_01174]
ATGGTGAACACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGTCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGTGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCCGCGGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGTACCCAGCTCGAGGAGATGCTGGCGAAGCACTCCACCACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATCCTTACGGCGGACGACGCACTCGCGTACGGTCTGGTGGACC
AGATCGTGTCCACCCGTAAGACCACCGCAGGCGCATCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

82.819

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

44.211

83.7

0.37
  clpP Streptococcus pyogenes JRS4

43.299

85.463

0.37
  clpP Streptococcus pyogenes MGAS315

43.299

85.463

0.37
  clpP Streptococcus pneumoniae Rx1

43.75

84.581

0.37
  clpP Streptococcus pneumoniae D39

43.75

84.581

0.37
  clpP Streptococcus pneumoniae R6

43.75

84.581

0.37
  clpP Streptococcus pneumoniae TIGR4

43.75

84.581

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37