Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG199_RS27385 Genome accession   NZ_CP108600
Coordinates   6343698..6344378 (+) Length   226 a.a.
NCBI ID   WP_351717451.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01176     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6338698..6349378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG199_RS27355 (OG199_27355) - 6339475..6339669 (+) 195 WP_054231893.1 hypothetical protein -
  OG199_RS27360 (OG199_27360) - 6340154..6340486 (+) 333 WP_405831726.1 hypothetical protein -
  OG199_RS27375 (OG199_27375) tig 6341098..6342483 (+) 1386 WP_351717453.1 trigger factor -
  OG199_RS27380 (OG199_27380) clpP 6342965..6343570 (+) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG199_RS27385 (OG199_27385) clpP 6343698..6344378 (+) 681 WP_351717451.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG199_RS27390 (OG199_27390) clpX 6344539..6345825 (+) 1287 WP_266699180.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG199_RS27395 (OG199_27395) - 6345906..6346883 (-) 978 WP_356802670.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24927.35 Da        Isoelectric Point: 4.7162

>NTDB_id=663734 OG199_RS27385 WP_351717451.1 6343698..6344378(+) (clpP) [Streptomyces sp. NBC_01176]
MNDFPGSGLHARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIDKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=663734 OG199_RS27385 WP_351717451.1 6343698..6344378(+) (clpP) [Streptomyces sp. NBC_01176]
GTGAACGACTTCCCCGGCAGCGGCCTCCACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGTGTCA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGTTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTCGAAATCGCGGCGAACGAGATCCTCCGGATGCGTGCGCAGCTCGAGGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGACAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCTGAGGACGCGCTGGCGTACGGGCTGATCGACCAGA
TCATCTCCACCCGCAAGATGAACAATTCCGCGGTCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.724

88.053

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.719

88.053

0.385
  clpP Streptococcus pneumoniae TIGR4

43.878

86.726

0.381
  clpP Streptococcus pneumoniae R6

43.878

86.726

0.381
  clpP Streptococcus pneumoniae Rx1

43.878

86.726

0.381
  clpP Streptococcus pneumoniae D39

43.878

86.726

0.381