Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG708_RS32885 Genome accession   NZ_CP108591
Coordinates   7195815..7196471 (+) Length   218 a.a.
NCBI ID   WP_327293892.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01180     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7190815..7201471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG708_RS32870 - 7192529..7192579 (+) 51 Protein_6488 hypothetical protein -
  OG708_RS32875 (OG708_32810) - 7192874..7193689 (+) 816 WP_327293894.1 MIP/aquaporin family protein -
  OG708_RS32880 (OG708_32815) - 7194016..7195653 (+) 1638 WP_327293893.1 alpha-L-fucosidase -
  OG708_RS32885 (OG708_32820) clpP 7195815..7196471 (+) 657 WP_327293892.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG708_RS32890 (OG708_32825) clpP 7196494..7197096 (+) 603 WP_327293891.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG708_RS32895 (OG708_32830) - 7197330..7197707 (-) 378 Protein_6493 helix-turn-helix domain-containing protein -
  OG708_RS32900 (OG708_32835) - 7197815..7198990 (-) 1176 WP_327293890.1 4-hydroxybenzoate 3-monooxygenase -
  OG708_RS32905 (OG708_32840) pcaC 7199057..7200217 (-) 1161 WP_327293889.1 4-carboxymuconolactone decarboxylase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23411.38 Da        Isoelectric Point: 4.7655

>NTDB_id=663609 OG708_RS32885 WP_327293892.1 7195815..7196471(+) (clpP) [Streptomyces sp. NBC_01180]
MSTSPTGWGTALAPRASDDDSTPATRFDDHLAAQLLMQRIVLLGTQVDEVSANRVCAQLLLLSAEDPKTDISLYINSPGG
SVTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLTVGESGKRFALPNARIMMHQPSAGIGGTAADIAIQAENLEFTKKS
IERITAEHTGQSEGTISRDGDRDRWFTAEQAKEYGMVDRVVESLDDVRPAGPRRRTGL

Nucleotide


Download         Length: 657 bp        

>NTDB_id=663609 OG708_RS32885 WP_327293892.1 7195815..7196471(+) (clpP) [Streptomyces sp. NBC_01180]
ATGTCCACTTCCCCTACCGGGTGGGGCACCGCTCTCGCCCCCCGAGCGTCCGACGACGACTCCACACCCGCCACCCGTTT
CGACGACCACCTGGCCGCACAGCTCCTGATGCAGCGCATCGTCCTGCTCGGTACGCAGGTTGACGAGGTGTCGGCCAACC
GGGTCTGCGCCCAGCTGCTCCTGCTGTCGGCGGAGGACCCGAAGACCGACATCAGCCTGTACATCAACAGCCCCGGTGGC
TCGGTGACGGCTGGTCTCGCGATCTACGACACCATGCGGCTCATCCCGAACGACGTCTCCACCCTCGCGATGGGATTCGC
CGCGAGCATGGGCCAGTTCCTGCTCACGGTCGGGGAATCGGGCAAGCGCTTCGCGCTGCCGAACGCGCGGATCATGATGC
ACCAGCCGTCGGCCGGGATCGGCGGGACCGCCGCCGATATCGCGATCCAGGCGGAGAACCTCGAATTCACCAAGAAGTCC
ATCGAGCGGATCACCGCGGAGCACACCGGCCAGAGCGAGGGGACGATCTCCCGCGACGGCGACCGTGACCGCTGGTTCAC
CGCGGAGCAGGCCAAGGAGTACGGCATGGTGGACCGGGTCGTGGAGTCGCTCGACGACGTCCGGCCGGCCGGTCCGCGGC
GACGGACGGGGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.438

81.651

0.404
  clpP Lactococcus lactis subsp. cremoris KW2

44.33

88.991

0.394
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.711

79.358

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.814

88.991

0.39
  clpP Streptococcus pneumoniae TIGR4

47.977

79.358

0.381
  clpP Streptococcus pneumoniae Rx1

47.977

79.358

0.381
  clpP Streptococcus pneumoniae D39

47.977

79.358

0.381
  clpP Streptococcus pneumoniae R6

47.977

79.358

0.381
  clpP Streptococcus pyogenes JRS4

46.857

80.275

0.376
  clpP Streptococcus pyogenes MGAS315

46.857

80.275

0.376
  clpP Streptococcus mutans UA159

46.286

80.275

0.372
  clpP Streptococcus thermophilus LMG 18311

45.665

79.358

0.362
  clpP Streptococcus thermophilus LMD-9

45.665

79.358

0.362