Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG708_RS11525 Genome accession   NZ_CP108591
Coordinates   2514558..2515241 (-) Length   227 a.a.
NCBI ID   WP_164261167.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01180     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2509558..2520241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG708_RS11515 (OG708_11460) - 2511969..2513000 (+) 1032 WP_327297609.1 hypothetical protein -
  OG708_RS11520 (OG708_11465) clpX 2513109..2514401 (-) 1293 WP_327297608.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG708_RS11525 (OG708_11470) clpP 2514558..2515241 (-) 684 WP_164261167.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG708_RS11530 (OG708_11475) - 2515292..2515900 (-) 609 WP_327299750.1 ATP-dependent Clp protease proteolytic subunit -
  OG708_RS11535 (OG708_11480) tig 2516195..2517607 (-) 1413 WP_405561030.1 trigger factor -
  OG708_RS11550 (OG708_11495) - 2518086..2519228 (-) 1143 WP_405561032.1 tyrosine-type recombinase/integrase -
  OG708_RS11555 (OG708_11500) - 2519228..2519434 (-) 207 WP_401971977.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24885.28 Da        Isoelectric Point: 4.5097

>NTDB_id=663564 OG708_RS11525 WP_164261167.1 2514558..2515241(-) (clpP) [Streptomyces sp. NBC_01180]
MVNTSMNDYSASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSD
LEIAANEILRMRTQLEDLLAKHSTTPVEKIRDDIERDKILTAEDALAYGLVDQIVSTRKGSVGMMTT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=663564 OG708_RS11525 WP_164261167.1 2514558..2515241(-) (clpP) [Streptomyces sp. NBC_01180]
ATGGTGAACACCAGCATGAACGACTACTCCGCCTCCGCCAGCGGCCTCTACACCGGCCCGCAGGTCGACAACCGCTACAT
CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTCTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCCATCTACATCAACAGCCCCGGTGGCTCGTTCACCGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCTGTCCTGCTGGCGGCCGGTACCCCCG
GCAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCCGAC
CTGGAGATCGCGGCCAACGAAATCCTGCGTATGCGTACCCAGTTGGAAGACCTGCTGGCCAAGCACTCCACGACGCCGGT
GGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCCTACGGCCTGGTCGACCAGA
TCGTCTCGACCCGCAAGGGCTCCGTGGGAATGATGACCACCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.206

83.26

0.41
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus mutans UA159

43.814

85.463

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37