Detailed information NTG0663563

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG708_RS11520
• Genome accession: NZ_CP108591
• Coordinates: 2513109..2514401 (-)
• Length: 430 a.a.
• NCBI ID: WP_327297608.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01180
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2508109..2519401

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG708_RS11510 (OG708_11455)	-	2509011..2511632 (-)	2622	WP_405561027.1	valine--tRNA ligase	-
OG708_RS11515 (OG708_11460)	-	2511969..2513000 (+)	1032	WP_327297609.1	hypothetical protein	-
OG708_RS11520 (OG708_11465)	clpX	2513109..2514401 (-)	1293	WP_327297608.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG708_RS11525 (OG708_11470)	clpP	2514558..2515241 (-)	684	WP_164261167.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG708_RS11530 (OG708_11475)	-	2515292..2515900 (-)	609	WP_327299750.1	ATP-dependent Clp protease proteolytic subunit	-
OG708_RS11535 (OG708_11480)	tig	2516195..2517607 (-)	1413	WP_405561030.1	trigger factor	-
OG708_RS11550 (OG708_11495)	-	2518086..2519228 (-)	1143	WP_405561032.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 430 a.a.
• Molecular weight: 47042.82 Da
• Isoelectric Point: 4.7809

>NTDB_id=663563 OG708_RS11520 WP_327297608.1 2513109..2514401(-) (clpX) [Streptomyces sp. NBC_01180]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGAGREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLERIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
ADVVRDNVNPTLVPREPRIVGNDGRHEKSA

Nucleotide

• Length: 1293 bp

>NTDB_id=663563 OG708_RS11520 WP_327297608.1 2513109..2514401(-) (clpX) [Streptomyces sp. NBC_01180]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGGAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGCCCCGGGGTGTACATCTGCGACGAGTGCATTGATCTCTGCAATGAGATCATTGAGGAAGAGCTCGCGGAGACCT
CCGAGGTGCGGTGGGAGGAACTGCCCAAACCGCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTAGCGGTCTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACGGCGGCGGCGCCGGCCG
CGAGGACGCGATCGAACTCGCCAAGTCCAACATCCTGTTGCTGGGCCCCACCGGCTCGGGCAAGACGCTGCTCGCCCAGA
CACTGGCCCGGATGCTCAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGCATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGCAAGAGCGAGAACCCGTCGATCACGCGTGATGTCTCTGGCGAGGGTGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACGACCGCCTCGGTGCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACCACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCTCCGGTCTGGAGCGGATCATCGAGTCCCGGGCGGGCGC
GAAGGGCATCGGCTTCGGCGCCACCATCCGCTCCAAGCGGGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTCCTGACCTCGGTGCACAACCTGGACCGC
GAGGCGCTGCTGCAGATCCTCGTCGAGCCGCGCAACGCACTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGTGT
GGAGCTGGACTTCGACCGTCCCGCGCTTGAGGCCATCGCCGACCAGGCGATCCTGCGCGGCACCGGGGCGCGTGGCCTGC
GCGCCATCATGGAGGAGGTCCTCCAATCGGTGATGTACGAGGTGCCGTCCCGCAAGGACGTCGCCCGGGTCGTCATCACC
GCGGACGTCGTCCGGGACAACGTGAACCCGACGCTGGTCCCGCGCGAGCCGCGGATCGTCGGCAACGACGGGCGCCACGA
GAAGTCGGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.433	93.488	0.593
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.398	95.814	0.512