Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MN210_RS00795 Genome accession   NZ_CP093310
Coordinates   185301..186461 (-) Length   386 a.a.
NCBI ID   WP_338412855.1    Uniprot ID   -
Organism   Psychrobacter raelei strain PraFG1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 180301..191461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN210_RS00775 (MN210_00985) - 181626..181958 (+) 333 WP_011959442.1 pyrimidine/purine nucleoside phosphorylase -
  MN210_RS00780 (MN210_00990) rlmB 182161..182946 (+) 786 WP_338412386.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MN210_RS00785 (MN210_00995) coaE 183050..183757 (-) 708 WP_083757352.1 dephospho-CoA kinase -
  MN210_RS00790 (MN210_01000) - 184297..185217 (-) 921 WP_338412387.1 A24 family peptidase -
  MN210_RS00795 (MN210_01005) pilC 185301..186461 (-) 1161 WP_338412855.1 type II secretion system F family protein Machinery gene
  MN210_RS00800 (MN210_01010) pilB 186604..187866 (-) 1263 WP_338412388.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MN210_RS00805 (MN210_01015) tpiA 188202..188999 (+) 798 WP_201545875.1 triose-phosphate isomerase -
  MN210_RS00810 (MN210_01020) secG 189165..189482 (+) 318 WP_011959449.1 preprotein translocase subunit SecG -
  MN210_RS00825 (MN210_01035) rimP 190439..190939 (+) 501 WP_241878916.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 42789.92 Da        Isoelectric Point: 10.2611

>NTDB_id=663443 MN210_RS00795 WP_338412855.1 185301..186461(-) (pilC) [Psychrobacter raelei strain PraFG1]
MKVKGILTSSSMALAKAQLRKQGIVTQRIRRKPKALWRRQKKITALDISLFVRQLATMTKAGVPIVQAFELIAQALDKPS
MKQLVLRVKQQLETGMSLEDSLRAHPKQFDDLFCALVSAAEHSGTLDTLLERIADYKENNELLKIKLKKAIKYPLAVMLV
AMIVSIILLLKVVPVFADLYDSMGSQLPAFTQFVVTLSHIMQKLWPIFLLLTIAAVITFRQAQKRSLGFNQWLDKAILKL
PIFGSIAYQAIIARFCRTLATTYAAGVPLLEALGATAAATDNHVFETATYQMRQQVAAGQRLERSMRNSQLFPALAVQMV
SIGEESGSLEQMLNKVADYYEAQVTHAVDGLTDLMEPIIMVIIGLLVGGLIVAMYLPIFQMGSILG

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=663443 MN210_RS00795 WP_338412855.1 185301..186461(-) (pilC) [Psychrobacter raelei strain PraFG1]
ATGAAGGTAAAAGGCATACTGACCAGTAGCAGTATGGCGCTGGCCAAAGCTCAGCTGCGCAAACAAGGCATAGTGACCCA
GCGCATTCGGCGTAAGCCTAAAGCGCTTTGGCGTCGGCAAAAGAAGATAACCGCACTTGATATCAGTCTGTTTGTGCGGC
AATTGGCGACGATGACCAAGGCCGGCGTGCCCATAGTACAGGCCTTTGAGCTTATTGCTCAAGCACTTGATAAACCCAGT
ATGAAGCAGCTGGTTTTACGGGTAAAACAGCAGCTTGAGACTGGTATGTCCTTAGAAGATAGCCTGCGGGCCCATCCAAA
ACAGTTTGATGACCTGTTTTGTGCTTTAGTGTCTGCAGCAGAGCACTCCGGCACGCTAGATACCTTACTTGAGCGCATCG
CTGATTACAAAGAAAACAACGAGCTGCTTAAAATTAAGCTAAAAAAAGCCATCAAATATCCGCTAGCCGTCATGCTGGTG
GCGATGATTGTCAGTATTATCTTATTGTTAAAAGTGGTGCCGGTGTTCGCAGACCTATATGACTCTATGGGGTCACAGCT
GCCTGCCTTTACCCAATTTGTAGTCACTTTGTCTCATATCATGCAAAAGCTTTGGCCAATTTTTTTGCTACTGACGATAG
CGGCTGTAATCACTTTTAGGCAGGCCCAAAAACGCAGCCTAGGCTTTAATCAGTGGCTCGACAAAGCGATATTAAAGCTG
CCCATTTTTGGTAGCATAGCCTATCAAGCCATTATTGCCCGCTTTTGCCGCACCTTAGCCACCACTTATGCTGCAGGTGT
CCCGCTGTTAGAAGCACTAGGTGCCACTGCCGCTGCAACTGACAATCATGTCTTTGAGACGGCCACCTACCAGATGAGAC
AACAGGTAGCTGCTGGTCAACGCCTTGAGCGCTCCATGCGCAACAGCCAGCTTTTTCCAGCTCTTGCCGTACAAATGGTG
AGTATCGGCGAGGAGTCTGGTAGCTTAGAGCAGATGCTTAATAAGGTGGCTGATTATTATGAAGCTCAGGTGACCCATGC
CGTTGATGGGTTAACCGACCTAATGGAGCCCATTATCATGGTGATCATTGGCCTGCTGGTCGGCGGGTTGATAGTGGCGA
TGTACTTACCTATTTTTCAAATGGGCTCAATCCTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-174)

Type II secretion system (T2SS), protein F (T2SSF)

(255-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

55.556

100

0.557
  pilC Acinetobacter baylyi ADP1

55.039

100

0.552
  pilC Pseudomonas stutzeri DSM 10701

53.125

99.482

0.528
  pilC Legionella pneumophila strain ERS1305867

50.653

99.223

0.503
  pilG Neisseria gonorrhoeae MS11

41.146

99.482

0.409
  pilC Vibrio cholerae strain A1552

40.464

100

0.407
  pilG Neisseria meningitidis 44/76-A

40.885

99.482

0.407
  pilC Vibrio campbellii strain DS40M4

40.58

89.378

0.363