Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG452_RS23775 Genome accession   NZ_CP108569
Coordinates   5194889..5195572 (+) Length   227 a.a.
NCBI ID   WP_164261167.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01197     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5189889..5200572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG452_RS23745 (OG452_23730) - 5190066..5191247 (-) 1182 WP_327297606.1 acyltransferase family protein -
  OG452_RS23750 (OG452_23735) - 5191751..5191945 (+) 195 WP_164261160.1 hypothetical protein -
  OG452_RS23765 (OG452_23750) tig 5192532..5193935 (+) 1404 WP_327297607.1 trigger factor -
  OG452_RS23770 (OG452_23755) - 5194230..5194838 (+) 609 WP_327299750.1 ATP-dependent Clp protease proteolytic subunit -
  OG452_RS23775 (OG452_23760) clpP 5194889..5195572 (+) 684 WP_164261167.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG452_RS23780 (OG452_23765) clpX 5195729..5197021 (+) 1293 WP_327297608.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG452_RS23785 (OG452_23770) - 5197130..5198161 (-) 1032 WP_327297609.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24885.28 Da        Isoelectric Point: 4.5097

>NTDB_id=663230 OG452_RS23775 WP_164261167.1 5194889..5195572(+) (clpP) [Streptomyces sp. NBC_01197]
MVNTSMNDYSASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSD
LEIAANEILRMRTQLEDLLAKHSTTPVEKIRDDIERDKILTAEDALAYGLVDQIVSTRKGSVGMMTT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=663230 OG452_RS23775 WP_164261167.1 5194889..5195572(+) (clpP) [Streptomyces sp. NBC_01197]
ATGGTGAACACCAGCATGAACGACTACTCCGCCTCCGCCAGCGGCCTCTACACCGGCCCGCAGGTCGACAACCGCTACAT
CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGTGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTCTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCCATCTACATCAACAGCCCCGGTGGCTCGTTCACCGCGCTGACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCTGTCCTGCTGGCGGCCGGTACCCCCG
GCAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCCGAC
CTGGAGATCGCGGCCAACGAAATCCTGCGTATGCGTACCCAGTTGGAAGACCTGCTGGCCAAGCACTCCACGACGCCGGT
GGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCCTACGGCCTGGTCGACCAGA
TCGTCTCGACCCGCAAGGGCTCCGTGGGAATGATGACCACCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.206

83.26

0.41
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus mutans UA159

43.814

85.463

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37