Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG457_RS29630 Genome accession   NZ_CP108554
Coordinates   6428063..6428728 (+) Length   221 a.a.
NCBI ID   WP_150257432.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01207     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6423063..6433728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG457_RS29600 (OG457_29600) - 6423114..6423692 (+) 579 WP_327385407.1 TIGR04222 domain-containing membrane protein -
  OG457_RS29605 (OG457_29605) - 6423874..6424083 (+) 210 WP_327385408.1 hypothetical protein -
  OG457_RS29620 (OG457_29625) tig 6425712..6427115 (+) 1404 WP_327385409.1 trigger factor -
  OG457_RS29625 (OG457_29630) - 6427392..6428009 (+) 618 WP_327385410.1 ATP-dependent Clp protease proteolytic subunit -
  OG457_RS29630 (OG457_29635) clpP 6428063..6428728 (+) 666 WP_150257432.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG457_RS29635 (OG457_29640) clpX 6428882..6430168 (+) 1287 WP_030008569.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG457_RS29640 (OG457_29645) - 6430335..6430610 (+) 276 WP_327385411.1 hypothetical protein -
  OG457_RS29645 (OG457_29650) - 6430665..6431600 (-) 936 WP_327385412.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24397.71 Da        Isoelectric Point: 4.6747

>NTDB_id=662926 OG457_RS29630 WP_150257432.1 6428063..6428728(+) (clpP) [Streptomyces sp. NBC_01207]
MVNTQMQNNFSASGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDL
EIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=662926 OG457_RS29630 WP_150257432.1 6428063..6428728(+) (clpP) [Streptomyces sp. NBC_01207]
ATGGTGAACACCCAGATGCAGAACAACTTCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTACGTCAT
CCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGAC
CGCGACATCTCCATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGT
GAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTGGCCGCCGGTACCCCCGGCA
AGCGCATGGCCCTGCCGAACGCCCGCGTGCTGATCCACCAGCCCTCGGGTGGCACCGGCCGCGAGCAGCTCTCCGACCTG
GAGATCGCGGCCAACGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACGACGCCGATCGA
GAAGATCCGAGACGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCCCTCGCGTACGGCCTGATCGACCAGATCG
TCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

85.973

0.457
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

85.068

0.425
  clpP Streptococcus thermophilus LMD-9

46.392

87.783

0.407
  clpP Streptococcus thermophilus LMG 18311

46.392

87.783

0.407
  clpP Streptococcus pyogenes MGAS315

47.368

85.973

0.407
  clpP Streptococcus pyogenes JRS4

47.368

85.973

0.407
  clpP Streptococcus mutans UA159

46.842

85.973

0.403
  clpP Streptococcus pneumoniae Rx1

46.073

86.425

0.398
  clpP Streptococcus pneumoniae D39

46.073

86.425

0.398
  clpP Streptococcus pneumoniae TIGR4

46.073

86.425

0.398
  clpP Streptococcus pneumoniae R6

46.073

86.425

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

86.425

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

86.425

0.385