Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG251_RS12470 Genome accession   NZ_CP108508
Coordinates   2817416..2818099 (-) Length   227 a.a.
NCBI ID   WP_073723177.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01237     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2812416..2823099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG251_RS12460 (OG251_12490) - 2814867..2815862 (+) 996 WP_326677222.1 hypothetical protein -
  OG251_RS12465 (OG251_12495) clpX 2815958..2817259 (-) 1302 WP_073723175.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG251_RS12470 (OG251_12500) clpP 2817416..2818099 (-) 684 WP_073723177.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG251_RS12475 (OG251_12505) - 2818179..2818784 (-) 606 WP_073723895.1 ATP-dependent Clp protease proteolytic subunit -
  OG251_RS12480 (OG251_12510) tig 2819076..2820470 (-) 1395 WP_073723179.1 trigger factor -
  OG251_RS12495 (OG251_12525) - 2821011..2822150 (-) 1140 WP_326677223.1 tyrosine-type recombinase/integrase -
  OG251_RS12500 (OG251_12530) - 2822150..2822359 (-) 210 WP_326677224.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24764.13 Da        Isoelectric Point: 4.6800

>NTDB_id=661806 OG251_RS12470 WP_073723177.1 2817416..2818099(-) (clpP) [Streptomyces sp. NBC_01237]
MVNTHMNNFPGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRSQLEEMLAKHSTTPLEKISEDIERDKILTADDALAYGLVDQIVSTRKTTAGAAV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=661806 OG251_RS12470 WP_073723177.1 2817416..2818099(-) (clpP) [Streptomyces sp. NBC_01237]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCCGCGGGCACGC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGGGTGCTCATCCACCAGCCGTCCTCGCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGTTCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATTCTCACCGCCGATGACGCCCTCGCGTACGGTCTGGTTGACC
AGATCGTCTCCACCCGTAAGACCACGGCCGGCGCGGCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.34

82.819

0.392
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

44.211

83.7

0.37
  clpP Streptococcus pyogenes MGAS315

43.299

85.463

0.37
  clpP Streptococcus pyogenes JRS4

43.299

85.463

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37
  clpP Streptococcus pneumoniae TIGR4

43.523

85.022

0.37
  clpP Streptococcus pneumoniae D39

43.523

85.022

0.37
  clpP Streptococcus pneumoniae Rx1

43.523

85.022

0.37
  clpP Streptococcus pneumoniae R6

43.523

85.022

0.37