Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SRT_RS01565 Genome accession   NZ_AP014612
Coordinates   302181..302675 (+) Length   164 a.a.
NCBI ID   WP_128832812.1    Uniprot ID   A0A1L7LHE6
Organism   Streptococcus troglodytae strain TKU 31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 297181..307675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS01540 (SRT_02910) trxA 297186..297500 (+) 315 WP_002263363.1 thioredoxin -
  SRT_RS01545 (SRT_02920) - 297600..298649 (+) 1050 WP_128832809.1 zinc-dependent alcohol dehydrogenase family protein -
  SRT_RS01550 (SRT_02930) mutY 298837..299982 (-) 1146 WP_128832810.1 A/G-specific adenine glycosylase -
  SRT_RS10350 (SRT_02950) - 300931..301151 (-) 221 Protein_273 hypothetical protein -
  SRT_RS01555 - 301473..301717 (+) 245 Protein_274 hypothetical protein -
  SRT_RS01560 (SRT_02960) rpsF 301873..302163 (+) 291 WP_128832811.1 30S ribosomal protein S6 -
  SRT_RS01565 (SRT_02970) ssbA 302181..302675 (+) 495 WP_128832812.1 single-stranded DNA-binding protein Machinery gene
  SRT_RS01570 (SRT_02980) rpsR 302704..302943 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SRT_RS11325 - 302990..303070 (-) 81 Protein_278 IS3 family transposase -
  SRT_RS01580 (SRT_02990) - 303149..303865 (+) 717 WP_128832813.1 TraX family protein -
  SRT_RS01585 (SRT_03000) hdrM 303873..304532 (-) 660 WP_128832814.1 hdrR negative regulator HdrM Regulator
  SRT_RS01590 (SRT_03010) hdrR 304555..304911 (-) 357 WP_161940062.1 LytTR family transcriptional regulator HdrR Regulator
  SRT_RS01595 (SRT_03020) - 305052..305714 (-) 663 WP_128832816.1 DUF1129 domain-containing protein -
  SRT_RS01600 (SRT_03030) - 306253..307197 (-) 945 WP_128832817.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18340.98 Da        Isoelectric Point: 4.9164

>NTDB_id=66162 SRT_RS01565 WP_128832812.1 302181..302675(+) (ssbA) [Streptococcus troglodytae strain TKU 31]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGHSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=66162 SRT_RS01565 WP_128832812.1 302181..302675(+) (ssbA) [Streptococcus troglodytae strain TKU 31]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACACTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAACATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGAACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTATGTCACAGAAGTTGTTGCGGACAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCACTCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGTGGAAATAACTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGCGATTCAAATCCTATGGATATTTCAGACGAC
GATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L7LHE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

72.561

0.372
  ssbB/cilA Streptococcus pneumoniae D39

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae R6

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis SK321

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

50.42

72.561

0.366

Multiple sequence alignment