Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   SRT_RS01585 Genome accession   NZ_AP014612
Coordinates   303873..304532 (-) Length   219 a.a.
NCBI ID   WP_128832814.1    Uniprot ID   -
Organism   Streptococcus troglodytae strain TKU 31     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 298873..309532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS10350 (SRT_02950) - 300931..301151 (-) 221 Protein_273 hypothetical protein -
  SRT_RS01555 - 301473..301717 (+) 245 Protein_274 hypothetical protein -
  SRT_RS01560 (SRT_02960) rpsF 301873..302163 (+) 291 WP_128832811.1 30S ribosomal protein S6 -
  SRT_RS01565 (SRT_02970) ssbA 302181..302675 (+) 495 WP_128832812.1 single-stranded DNA-binding protein Machinery gene
  SRT_RS01570 (SRT_02980) rpsR 302704..302943 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SRT_RS11325 - 302990..303070 (-) 81 Protein_278 IS3 family transposase -
  SRT_RS01580 (SRT_02990) - 303149..303865 (+) 717 WP_128832813.1 TraX family protein -
  SRT_RS01585 (SRT_03000) hdrM 303873..304532 (-) 660 WP_128832814.1 hdrR negative regulator HdrM Regulator
  SRT_RS01590 (SRT_03010) hdrR 304555..304911 (-) 357 WP_161940062.1 LytTR family transcriptional regulator HdrR Regulator
  SRT_RS01595 (SRT_03020) - 305052..305714 (-) 663 WP_128832816.1 DUF1129 domain-containing protein -
  SRT_RS01600 (SRT_03030) - 306253..307197 (-) 945 WP_128832817.1 magnesium transporter CorA family protein -
  SRT_RS01605 - 307420..307676 (-) 257 Protein_284 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24986.86 Da        Isoelectric Point: 5.8903

>NTDB_id=66163 SRT_RS01585 WP_128832814.1 303873..304532(-) (hdrM) [Streptococcus troglodytae strain TKU 31]
MLGLLALYLIIIAFIPEFHIFFSNMLMLTLFFMLIALSNRSIFFFFLALGFLSIYLKDIFHFDYSTGPLFTGIIIIGVIL
NSFLKPHYSYSYKGNHYFNMKQNANYIDNETDVFLKTLFSENTSYVTSQELNKIIIDTKFGEQSVDLSQAQFMTDSPEIH
IDVSFGETNLRIPNNWKIINKTHSPFASVSFSGFPSTNGDFINVTLTGTVAMGSLNIQY

Nucleotide


Download         Length: 660 bp        

>NTDB_id=66163 SRT_RS01585 WP_128832814.1 303873..304532(-) (hdrM) [Streptococcus troglodytae strain TKU 31]
CTGCTTGGGCTTCTCGCACTTTACCTTATTATTATTGCTTTTATCCCGGAATTTCATATTTTCTTTAGCAACATGTTAAT
GTTGACCCTGTTCTTTATGTTAATAGCTTTGAGTAACAGGAGTATCTTCTTTTTCTTTCTAGCCTTAGGCTTTCTTAGTA
TCTACTTGAAAGATATCTTTCATTTTGACTATTCTACAGGACCACTTTTTACGGGTATAATCATTATCGGCGTTATTTTA
AATAGCTTCCTCAAACCACACTATTCTTATTCTTATAAAGGAAATCATTATTTTAATATGAAACAAAATGCTAATTATAT
TGATAACGAAACAGATGTCTTTTTAAAAACACTTTTTTCTGAAAATACCAGTTATGTGACTTCTCAAGAATTAAATAAAA
TTATTATTGATACTAAGTTTGGAGAACAATCTGTTGATCTCTCCCAAGCTCAATTTATGACAGATTCTCCTGAGATTCAT
ATAGATGTTAGCTTTGGTGAGACTAATCTTCGCATTCCAAACAACTGGAAAATCATCAATAAAACTCACTCCCCCTTTGC
TTCCGTTTCATTTTCAGGTTTTCCTAGCACAAATGGTGATTTTATTAATGTTACATTGACTGGAACAGTGGCTATGGGAT
CTCTAAACATTCAATATTAA

Domains

Predicted by InterproScan.

Cell wall-active antibiotics response 4TMS YvqF (LiaF-like_C)

(119-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

97.26

100

0.973

Multiple sequence alignment