Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG295_RS22830 Genome accession   NZ_CP108442
Coordinates   5094428..5095108 (+) Length   226 a.a.
NCBI ID   WP_371678548.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01276     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5089428..5100108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS22800 (OG295_22815) - 5090102..5090305 (+) 204 WP_362235102.1 excisionase family DNA-binding protein -
  OG295_RS22805 (OG295_22820) - 5090305..5091480 (+) 1176 WP_371678547.1 tyrosine-type recombinase/integrase -
  OG295_RS22820 (OG295_22835) tig 5092057..5093445 (+) 1389 WP_266839022.1 trigger factor -
  OG295_RS22825 (OG295_22840) - 5093737..5094354 (+) 618 WP_030229632.1 ATP-dependent Clp protease proteolytic subunit -
  OG295_RS22830 (OG295_22845) clpP 5094428..5095108 (+) 681 WP_371678548.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG295_RS22835 (OG295_22850) clpX 5095263..5096549 (+) 1287 WP_030229634.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG295_RS22840 (OG295_22855) - 5096622..5097596 (-) 975 WP_371678549.1 hypothetical protein -
  OG295_RS22845 (OG295_22860) - 5097690..5098316 (-) 627 WP_371678550.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24793.17 Da        Isoelectric Point: 4.5861

>NTDB_id=660769 OG295_RS22830 WP_371678548.1 5094428..5095108(+) (clpP) [Streptomyces sp. NBC_01276]
MVNTQMQNNFSANFSASGLYSGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLES
MDPDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQ
LSDLEIAANEILRMRDQLEAMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKSSAV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=660769 OG295_RS22830 WP_371678548.1 5094428..5095108(+) (clpP) [Streptomyces sp. NBC_01276]
ATGGTGAACACCCAGATGCAGAACAACTTCTCCGCGAACTTCTCCGCGAGCGGCCTCTACTCCGGCCCGCAGGTGGACAA
CCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGG
AGCGCGTCATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCG
ATGGACCCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGTGGTTCCTTCACCGCGCTGACGGCGATCTACGACAC
GATGCAGTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCCGCCG
GTACCCCCGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCCTCGGGCGGCACCGGCCGTGAGCAG
CTCTCCGACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGGCCATGCTGGCCAAGCACTCGAC
CACGCCGATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCTCTCGCGTACGGCCTGA
TCGACCAGATCGTCTCCACCCGCAAGAGCAGCGCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(40-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

84.071

0.447
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.392

85.841

0.398
  clpP Streptococcus thermophilus LMG 18311

46.392

85.841

0.398
  clpP Streptococcus pyogenes MGAS315

47.368

84.071

0.398
  clpP Streptococcus pyogenes JRS4

47.368

84.071

0.398
  clpP Streptococcus mutans UA159

46.842

84.071

0.394
  clpP Streptococcus pneumoniae Rx1

46.073

84.513

0.389
  clpP Streptococcus pneumoniae D39

46.073

84.513

0.389
  clpP Streptococcus pneumoniae TIGR4

46.073

84.513

0.389
  clpP Streptococcus pneumoniae R6

46.073

84.513

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.513

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.513

0.376