Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MLD56_RS10270 Genome accession   NZ_CP092831
Coordinates   2243047..2244315 (+) Length   422 a.a.
NCBI ID   WP_029517041.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain ZBSF16     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2238047..2249315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD56_RS10240 (MLD56_10240) - 2238883..2239137 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  MLD56_RS10245 (MLD56_10245) - 2239365..2240138 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  MLD56_RS10250 (MLD56_10250) - 2240169..2241269 (+) 1101 WP_029517040.1 RodZ domain-containing protein -
  MLD56_RS10255 (MLD56_10255) - 2241354..2241518 (+) 165 WP_023988236.1 hypothetical protein -
  MLD56_RS10260 (MLD56_10260) - 2241663..2242154 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  MLD56_RS10265 (MLD56_10265) pgsA 2242364..2242951 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MLD56_RS10270 (MLD56_10270) cinA 2243047..2244315 (+) 1269 WP_029517041.1 competence/damage-inducible protein A Machinery gene
  MLD56_RS10275 (MLD56_10275) recA 2244557..2245618 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  MLD56_RS10280 (MLD56_10280) - 2245814..2246563 (+) 750 WP_029517042.1 RecX family transcriptional regulator -
  MLD56_RS10285 (MLD56_10285) rny 2246938..2248482 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46297.24 Da        Isoelectric Point: 4.7168

>NTDB_id=660659 MLD56_RS10270 WP_029517041.1 2243047..2244315(+) (cinA) [Paenibacillus peoriae strain ZBSF16]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKDA
IASVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEFMYASEDVTLEKVIVDLMANRGLTVSAAESCTGGLLMEHLTSIPGSATMFQGGIVCYSNEMKMKLLNVP
CDYLEGDQAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=660659 MLD56_RS10270 WP_029517041.1 2243047..2244315(+) (cinA) [Paenibacillus peoriae strain ZBSF16]
ATGAAAGCTGAAATAATTGCGGTAGGAACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGTTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAGATCGGCTTCAGGAAGCCATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTATTTTCTGGCGGTCTGGGACCGACCCAGGATGATTTGACGAAAGATGCG
ATAGCGTCTGTATTGGGGCGAAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTTCGTAACCGTGG
GGTAGAAATGACCGAAAATAACCGCCGGCAGGCGCTTTCTATTGAAGGTGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCAATTGCACAGGATGGTAAATTTTATGTAGTTTTGCCTGGACCTCCTAAGGAACTCAAACCGATGTTT
GCAAACCAGGCCAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCAAAAATGCTAAAATT
TGCAGGGATTGGTGAGTCAGCTCTTGAAACCCGTTTGTTAGATCTGATCCAATCCCAGACAGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTGATTAAGCTGACGGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAATTTATGTATGCAAGCGAAGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAATCGCGGACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGACTGCTGATGGAACACCTCACTTCTA
TACCTGGCAGTGCTACTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TGTGATTATTTAGAGGGGGATCAAGCGCCAGGTGCAGTGAGTAAGGAAGTGGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTAGCCGGACCTGGGTATTCCGAACGTAAGCCAGTCGGTCTAG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGTAACCGCGAAACAATCCGA
CTGCGATCAGTCAAAGCGATTCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(260-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.244

97.156

0.488
  cinA Streptococcus pneumoniae TIGR4

50.244

97.156

0.488
  cinA Streptococcus mitis NCTC 12261

50

97.156

0.486
  cinA Streptococcus pneumoniae Rx1

50

97.156

0.486
  cinA Streptococcus pneumoniae R6

50

97.156

0.486
  cinA Streptococcus pneumoniae D39

49.756

97.156

0.483
  cinA Bacillus subtilis subsp. subtilis str. 168

49.505

95.735

0.474
  cinA Streptococcus mutans UA159

46.118

100

0.464
  cinA Streptococcus suis isolate S10

45.17

90.758

0.41