Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG534_RS24555 Genome accession   NZ_CP108423
Coordinates   5438771..5439421 (+) Length   216 a.a.
NCBI ID   WP_326590748.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01294     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5433771..5444421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG534_RS24520 (OG534_24555) - 5433892..5434347 (+) 456 WP_326590736.1 HD domain-containing protein -
  OG534_RS24525 (OG534_24560) - 5434521..5434715 (+) 195 WP_030008564.1 membrane protein -
  OG534_RS24530 (OG534_24565) - 5435208..5435456 (-) 249 WP_326590743.1 hypothetical protein -
  OG534_RS24545 (OG534_24580) tig 5436391..5437779 (+) 1389 WP_326590745.1 trigger factor -
  OG534_RS24550 (OG534_24585) - 5438076..5438693 (+) 618 WP_326590747.1 ATP-dependent Clp protease proteolytic subunit -
  OG534_RS24555 (OG534_24590) clpP 5438771..5439421 (+) 651 WP_326590748.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG534_RS24560 (OG534_24595) clpX 5439575..5440861 (+) 1287 WP_326590751.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG534_RS24565 (OG534_24600) - 5440929..5441858 (-) 930 WP_326590752.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23744.99 Da        Isoelectric Point: 4.6747

>NTDB_id=660341 OG534_RS24555 WP_326590748.1 5438771..5439421(+) (clpP) [Streptomyces sp. NBC_01294]
MNNLSPASGLYSGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI
YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAAN
EILRMRDQLENMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIISTRKSSH

Nucleotide


Download         Length: 651 bp        

>NTDB_id=660341 OG534_RS24555 WP_326590748.1 5438771..5439421(+) (clpP) [Streptomyces sp. NBC_01294]
ATGAACAACCTCTCCCCCGCGAGCGGCCTCTACTCCGGCCCGCAGGTGGACAACCGCTACGTCATCCCGCGCTTCGTCGA
GCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGA
TCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCGATC
TACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCA
GACGGTCTGCATGGGCCAGGCTGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGCACCCCCGGCAAGCGCATGGCCCTGC
CGAACGCCCGCGTGCTGATCCACCAGCCCTCCGGTGGCACCGGCCGTGAGCAGCTCTCGGACCTGGAGATCGCGGCCAAC
GAGATCCTGCGCATGCGCGACCAGCTGGAGAACATGCTGGCCAAGCACTCGACGACGCCGATCGAGAAGATCCGCGACGA
CATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACCAGATCATCTCCACCCGTAAGA
GCTCGCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

87.963

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

87.037

0.435
  clpP Streptococcus thermophilus LMD-9

46.392

89.815

0.417
  clpP Streptococcus thermophilus LMG 18311

46.392

89.815

0.417
  clpP Streptococcus pyogenes MGAS315

47.368

87.963

0.417
  clpP Streptococcus pyogenes JRS4

47.368

87.963

0.417
  clpP Streptococcus mutans UA159

46.842

87.963

0.412
  clpP Streptococcus pneumoniae Rx1

46.073

88.426

0.407
  clpP Streptococcus pneumoniae D39

46.073

88.426

0.407
  clpP Streptococcus pneumoniae TIGR4

46.073

88.426

0.407
  clpP Streptococcus pneumoniae R6

46.073

88.426

0.407
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

88.426

0.403
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

88.426

0.394