Detailed information NTG0660342

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG534_RS24560
• Genome accession: NZ_CP108423
• Coordinates: 5439575..5440861 (+)
• Length: 428 a.a.
• NCBI ID: WP_326590751.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01294
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5434575..5445861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG534_RS24530 (OG534_24565)	-	5435208..5435456 (-)	249	WP_326590743.1	hypothetical protein	-
OG534_RS24545 (OG534_24580)	tig	5436391..5437779 (+)	1389	WP_326590745.1	trigger factor	-
OG534_RS24550 (OG534_24585)	-	5438076..5438693 (+)	618	WP_326590747.1	ATP-dependent Clp protease proteolytic subunit	-
OG534_RS24555 (OG534_24590)	clpP	5438771..5439421 (+)	651	WP_326590748.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG534_RS24560 (OG534_24595)	clpX	5439575..5440861 (+)	1287	WP_326590751.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG534_RS24565 (OG534_24600)	-	5440929..5441858 (-)	930	WP_326590752.1	hypothetical protein	-
OG534_RS24570 (OG534_24605)	-	5441986..5444607 (+)	2622	WP_326590754.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46957.85 Da
• Isoelectric Point: 4.8265

>NTDB_id=660342 OG534_RS24560 WP_326590751.1 5439575..5440861(+) (clpX) [Streptomyces sp. NBC_01294]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFHEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPHEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=660342 OG534_RS24560 WP_326590751.1 5439575..5440861(+) (clpX) [Streptomyces sp. NBC_01294]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAGCTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCGGTAGCGGTCTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCGGGCAAGACGCTGCTGGCCCAGA
CCCTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAAACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTCTCGGGTGAAGGCGTCCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACGACCGCCTCCGTCCCGCCGCAGGGCGGCCGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGTGCGGGTGC
GAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCGACCAGTTCCACGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTGCTGACCTCCGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCACTGGTGAAGCAGTACCAGCGCCTGTTCGAACTCGACGGTGT
GGAACTGGACTTCGAGCGCGAGGCCCTCGAAGCCATCGCCGACCAGGCCATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTCATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
TCGGACGTGGTCCGCTCCAACGTGAACCCGACGCTGGTCCCGCGCATCGTCCCGAAGGACCAGGGCCCGCACGAGAAGTC
CGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.925	0.598
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.771	96.028	0.516